https://github.com/juke34/aline

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

bbmap bowtie bowtie2 bwa bwamem2 dragmap graphmap2 hisat2 kallisto last minimap2 nextflow ngmlr novoalign nucmer salmon star starlong sublong subread

Last synced: 18 Feb 2026

https://github.com/juke34/awesome-community-bioinformatics

A list of awesome bioinformatics communities

Last synced: 06 Mar 2026

https://github.com/juke34/coordinate_systems

Coordinate systemes in genomics (https://juke34.github.io/coordinate_systems/)

bioinformatics genomics

Last synced: 19 Feb 2026

https://github.com/juke34/awesome-genome-annotation

Awesome genome/mitome/plastome/plastidome annotation tool list

Last synced: 06 Dec 2025

https://github.com/juke34/sapin

Summarize Alignment Pile by Nucleotide

alignment bam

Last synced: 02 Mar 2026

https://juke34.github.io/awesome-genome-annotation/

Awesome genome/mitome/plastome/plastidome annotation tool list

Last synced: 06 May 2025

https://github.com/juke34/biten

A Bioinformatics Nextflow Pipeline Template

bioinformatics nextflow pipelines template training

Last synced: 16 Feb 2026

https://github.com/juke34/knowledge

My collection of cheat sheets / overviews / summaries and more

bioinformatics cheat-sheets knowledge overviews summaries

Last synced: 06 Mar 2026

https://github.com/juke34/samreadviewer

Small utility to visualise read alignment directly from sam format without reference

Last synced: 06 Mar 2026

https://github.com/juke34/bioinfompt

Calendar Montpellier events in bioinfo/biostat

bioinformatics events montpellier

Last synced: 18 Apr 2026

https://github.com/juke34/fix-anaconda-licensing-issues

Last synced: 05 Mar 2025

https://github.com/juke34/daisy-chaining-aline

Example of daisy chaining nextflow pipeline with the AliNe pipeline

cascade daisy-chain nextflow

Last synced: 21 Feb 2026

https://github.com/juke34/juke34

repository used to add a README.md to the GitHub profile

Last synced: 09 Mar 2026

https://github.com/juke34/rado_members

RADO (Réseau d’Analyse de DOnnées) interactive member info page https://Juke34.github.io/RADO_members/

Last synced: 05 Mar 2025

https://github.com/juke34/lookal

Last synced: 22 Apr 2026

https://github.com/juke34/juke34.github.io

Github Pages for academic personal websites, forked from mmistakes/minimal-mistakes

Last synced: 17 Jan 2026

https://github.com/juke34/folkvanlig

Specification related to the ikea bike folkvanlig 2

Last synced: 06 Mar 2026

https://github.com/juke34/jacquesdainat.github.io

Last synced: 07 Mar 2026

https://github.com/juke34/zikhandling

Some scripts to help handling music collection

Last synced: 06 Oct 2025

https://github.com/juke34/git_tutorial

Last synced: 27 Jul 2025

https://github.com/juke34/jdpackage

What the Package Does (One Line, Title Case)

Last synced: 29 May 2026

https://github.com/juke34/ifb-staff

Last synced: 19 Apr 2026