https://github.com/juke34/aline

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

bbmap bowtie bowtie2 bwa bwamem2 dragmap graphmap2 hisat2 kallisto last minimap2 nextflow ngmlr novoalign nucmer salmon star starlong sublong subread

Last synced: 18 Feb 2026