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Projects in Awesome Lists tagged with quantification

A curated list of projects in awesome lists tagged with quantification .

https://github.com/COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

10x bioinformatics c-plus-plus gene-expression quantification quasi-mapping rna-seq rna-seq-quantification rnaseq sailfish salmon scrna-seq selective-alignment single-cell single-cell-rna-seq transcriptome

Last synced: 11 May 2025

https://github.com/COMBINE-lab/alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

10x quantification rna-seq rust single-cell single-cell-rna-seq transcriptomics

Last synced: 28 Apr 2025

https://github.com/theislab/kbet

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

batch-effects data-science quantification scrnaseq

Last synced: 11 Oct 2025

https://github.com/rajewsky-lab/mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

analysis mapping microrna mirna prediction quantification sequencing smallrna

Last synced: 02 Feb 2026

https://github.com/songjian/cnstats

获取中国国家统计局网站数据。

python quantification stats

Last synced: 19 Apr 2025

https://github.com/Aegis1863/LLMs-Distillation-Quantification

Repo of "Quantification of Large Language Model Distillation"

distillation llms quantification

Last synced: 12 Apr 2025

https://github.com/HLT-ISTI/QuaPy

A framework for Quantification written in Python

machine-learning quantification supervised-prevalence-estimation

Last synced: 05 Apr 2025

https://github.com/elliotekj/deltae

DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm

cie ciede2000 color quantification rust

Last synced: 31 Jul 2025

https://github.com/bkrem/quanti-team

:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable

blockchain collaboration paper proof-of-concept quantification tendermint

Last synced: 06 May 2025

https://github.com/comprna/ORQAS

ORF Quantification pipeline for Alternative Splicing

differential-splicing-analysis quantification ribo-seq translation

Last synced: 10 Jul 2025

https://github.com/bigbio/ibaqpy

Absolute quantification package based on quantms.io

absolute-quantification ibaq mass-spectrometry proteomics quantification

Last synced: 14 Jan 2026

https://github.com/cpanse/protviz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

cran fun mass-spectrometry peptide-identification proteomics quantification rstats visualization

Last synced: 12 Dec 2025

https://github.com/erdogant/flameplot

flameplot is a python package for the quantification of local similarity across two maps or embeddings.

dimensionality-reduction embeddings high-dimensional pca python quantification tsne umap

Last synced: 19 Apr 2025

https://github.com/aphalo/photobiology

Package ‘photobiology’ defines a system of classes for storing spectral data and accompanying methods and operators. This is the core of a suite of R packages for photobiological calculations.

light photobiology quantification r4photobiology-suite radiation spectra sun-position

Last synced: 20 Jan 2026

https://github.com/snimmagadda1/pd-and-et-tremor-quantification

🏥 Quantification of Parkinsonian and Essential Tremor using a novel, bluetooth-integrated accelerometer based system

bluetooth duke-university microcontroller parkinson pic quantification wearable wearable-devices

Last synced: 08 May 2025

https://github.com/fitushar/quantification-of-trabeculae-inside-the-heart-from-mri-using-fractal-analysis

In this project, we demonstrate the fractal dimension (FD) and manual segmentation of the Magnetic Resonance Imaging (MRI) of the heart that quantify amount of trabeculae inside the heart.

biomedical-image-processing compaction fractal-algorithms fractal-analysis heart mri quantification trabeculae-inside

Last synced: 21 Feb 2025

https://github.com/wilsontom/srm

Toolkit for Selective Reaction Monitoring (SRM) Mass Spectrometry (MS) Data

lcms mass-spectrometry metabolomics quantification srm-ms triple-quadrupole

Last synced: 24 Oct 2025

https://github.com/lambda-science/myoquant

MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant

computer-vision deep-learning disease histology image medecine python pytorch quantification tensorflow

Last synced: 26 Sep 2025

https://github.com/lambda-science/myoquant-streamlit

MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant

computer-vision deep-learning disease histology image medecine python pytorch quantification streamlit tensorflow

Last synced: 31 Dec 2025

https://github.com/pawel-czyz/labelshift

Bayesian Quantification with Black-Box Estimators

data-shift label-shift machine-learning prior-probability-shift quantification

Last synced: 01 Jul 2025

https://github.com/nuno-agostinho/rsem-docker

Docker to run RSEM for transcript quantification

docker quantification rsem transcript

Last synced: 18 Aug 2025

https://github.com/mirkobunse/qunfold.jl

Unified framework of quantification and unfolding algorithms

julia machine-learning quantification

Last synced: 29 Oct 2025

https://github.com/songjian/economic-data-tools

经济数据工具

quantification

Last synced: 16 Mar 2025

https://github.com/adelia567/crispr

Crispr is a web app that simplifies the design and analysis of CRISPR guide RNAs, making it accessible for everyone. 🧬 With features like off-target scanning and AI reporting, users can quickly generate and evaluate their gRNA options. 🐙

amplicon-sequences awesome bioconductor-package bioinformatics cas crispr-analysis crispr-cas-systems crispr-subtypes grna grna-sequence nf-core ngs pipeline python quantification sanger sgrna-design workflow

Last synced: 26 Jun 2025

https://github.com/nuno-agostinho/sailfish-docker

Docker to run sailfish for quantification of isoform abundance

abundance docker isoform isoform-quantification quantification rna-seq sailfish

Last synced: 18 Aug 2025

https://github.com/cpanse/cosmiq

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cosmiq.html Contributions: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cosmiq.

gcms lcms lipidomics metabolomics quantification

Last synced: 18 Oct 2025

https://github.com/harigovindd/crisp

Crisp is a high-performance messaging solution designed for speed and security, achieving up to 860K messages per second. With cutting-edge features like VetKey security and BF16 vectors, Crisp ensures efficient communication while maintaining a lightweight memory footprint. 🐙🌟

amplicon-sequences astrobuild audio cas9 crispr crispr-cas9 docker ghost hugo-blog markdoc markdown messenger quantification recognition speech timestamps transcription widget

Last synced: 18 Jun 2025

https://github.com/drpatelh/nf-core-sgrnaquant

UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline

counting crispr crispr-analysis nextflow nf-core pipeline quantification sgrna workflow

Last synced: 03 Mar 2025