Projects in Awesome Lists tagged with quantification
A curated list of projects in awesome lists tagged with quantification .
https://github.com/COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
10x bioinformatics c-plus-plus gene-expression quantification quasi-mapping rna-seq rna-seq-quantification rnaseq sailfish salmon scrna-seq selective-alignment single-cell single-cell-rna-seq transcriptome
Last synced: 11 May 2025
https://github.com/diplib/diplib
Quantitative Image Analysis in C++, MATLAB and Python
bio-formats cpp cpp14 dipimage diplib filtering image-analysis image-processing image-viewer mathematical-morphology matlab python python3 quantification quantitative-image-analysis
Last synced: 15 May 2025
https://github.com/COMBINE-lab/alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
10x quantification rna-seq rust single-cell single-cell-rna-seq transcriptomics
Last synced: 28 Apr 2025
https://github.com/Aegis1863/LLMs-Distillation-Quantification
Repo of "Quantification of Large Language Model Distillation"
distillation llms quantification
Last synced: 12 Apr 2025
https://github.com/HLT-ISTI/QuaPy
A framework for Quantification written in Python
machine-learning quantification supervised-prevalence-estimation
Last synced: 05 Apr 2025
https://github.com/elliotekj/deltae
DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm
cie ciede2000 color quantification rust
Last synced: 12 Apr 2025
https://github.com/bkrem/quanti-team
:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable
blockchain collaboration paper proof-of-concept quantification tendermint
Last synced: 06 May 2025
https://github.com/comprna/ORQAS
ORF Quantification pipeline for Alternative Splicing
differential-splicing-analysis quantification ribo-seq translation
Last synced: 20 Nov 2024
https://github.com/cpanse/protviz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
cran fun mass-spectrometry peptide-identification proteomics quantification rstats visualization
Last synced: 15 Dec 2024
https://github.com/ElisabethKugler/ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
fiji fiji-macro-language image-processing lightsheet microscopy microscopy-data openscience quantification registration segmentation vasculature zebrafish
Last synced: 07 May 2025
https://github.com/erdogant/flameplot
flameplot is a python package for the quantification of local similarity across two maps or embeddings.
dimensionality-reduction embeddings high-dimensional pca python quantification tsne umap
Last synced: 19 Apr 2025
https://github.com/snimmagadda1/pd-and-et-tremor-quantification
🏥 Quantification of Parkinsonian and Essential Tremor using a novel, bluetooth-integrated accelerometer based system
bluetooth duke-university microcontroller parkinson pic quantification wearable wearable-devices
Last synced: 08 May 2025
https://github.com/fitushar/quantification-of-trabeculae-inside-the-heart-from-mri-using-fractal-analysis
In this project, we demonstrate the fractal dimension (FD) and manual segmentation of the Magnetic Resonance Imaging (MRI) of the heart that quantify amount of trabeculae inside the heart.
biomedical-image-processing compaction fractal-algorithms fractal-analysis heart mri quantification trabeculae-inside
Last synced: 21 Feb 2025
https://github.com/aphalo/photobiology
Package ‘photobiology’ defines a system of classes for storing spectral data and accompanying methods and operators. This is the core of a suite of R packages for photobiological calculations.
light photobiology quantification r4photobiology-suite radiation spectra sun-position
Last synced: 07 Apr 2025
https://github.com/lambda-science/myoquant
MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant
computer-vision deep-learning disease histology image medecine python pytorch quantification tensorflow
Last synced: 16 Jan 2025
https://github.com/lambda-science/myoquant-streamlit
MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant
computer-vision deep-learning disease histology image medecine python pytorch quantification streamlit tensorflow
Last synced: 06 Mar 2025
https://github.com/hammerling-research-group/dlq_py
Production code for the Python implementation of the DLQ algorithm
algorithm detection dlq emissions localization methane-detection oil-and-gas python quantification sensors
Last synced: 18 Feb 2025
https://github.com/pawel-czyz/labelshift
Bayesian Quantification with Black-Box Estimators
data-shift label-shift machine-learning prior-probability-shift quantification
Last synced: 11 Mar 2025
https://github.com/yufongpeng/chemistryquantitativeanalysis.jl
Quantitative analysis of chemicals
analytical-chemistry calibration-curve quantification quantitative-analysis
Last synced: 10 Apr 2025
https://github.com/mirkobunse/qunfold.jl
Unified framework of quantification and unfolding algorithms
julia machine-learning quantification
Last synced: 23 Feb 2025
https://github.com/drpatelh/nf-core-sgrnaquant
UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline
counting crispr crispr-analysis nextflow nf-core pipeline quantification sgrna workflow
Last synced: 03 Mar 2025
https://github.com/cpanse/cosmiq
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cosmiq.html Contributions: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cosmiq.
gcms lcms lipidomics metabolomics quantification
Last synced: 03 Apr 2025
https://github.com/hammerling-research-group/dlq
Production code for DLQ Algorithm
algorithm detection dlq emissions localization methane-detection oil-and-gas quantification sensors
Last synced: 18 Feb 2025