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Projects in Awesome Lists tagged with bio-formats
A curated list of projects in awesome lists tagged with bio-formats .
https://github.com/ome/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
bio-formats format-converter format-reader image java life-sciences-image lightsheet metadata whole-slide-imaging wsi
Last synced: 13 Nov 2024
https://github.com/diplib/diplib
Quantitative Image Analysis in C++, MATLAB and Python
bio-formats cpp cpp14 dipimage diplib filtering image-analysis image-processing image-viewer mathematical-morphology matlab python python3 quantification quantitative-image-analysis
Last synced: 20 Dec 2024
https://github.com/allencellmodeling/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
bio-formats dask image-metadata imageio microscopy python scientific-computing scientific-formats xarray
Last synced: 20 Dec 2024
https://github.com/AllenCellModeling/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
bio-formats dask image-metadata imageio microscopy python scientific-computing scientific-formats xarray
Last synced: 14 Nov 2024
https://github.com/aoles/rbioformats
:books: R interface to the Bio-Formats library
bio-formats bioconductor image-processing r
Last synced: 31 Oct 2024
https://github.com/WolframResearch/BioFormatsLink
Package for interacting with Bio-Formats library in the Wolfram Language
bio-formats java jlink library mathematica microscopy wolfram-language
Last synced: 20 Nov 2024
https://github.com/wolframresearch/bioformatslink
Package for interacting with Bio-Formats library in the Wolfram Language
bio-formats java jlink library mathematica microscopy wolfram-language
Last synced: 08 Dec 2024
https://github.com/biologytools/biogtk
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
bio-formats biology cross-platform geojson gtk image-stacks imagej imagej-roi imagej-tiff microscopy omero openslide plugins qupath roi segment-anything segment-anything-model whole-slide-image
Last synced: 19 Nov 2024
https://github.com/biologytools/bio
A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
bio-formats biology csv imagej microscopy ome omero roi whole-slide-image
Last synced: 03 Dec 2024
https://github.com/biologytools/biocore
Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
bio-formats biology csv imagej imagej-roi microscopy ome roi whole-slide-image
Last synced: 03 Dec 2024