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An open API service indexing awesome lists of open source software.

Projects in Awesome Lists tagged with qupath

A curated list of projects in awesome lists tagged with qupath .

https://github.com/bayer-group/paquo

PAthological QUpath Obsession - QuPath and Python conversations

digital-pathology python qupath

Last synced: 10 Mar 2026

https://github.com/Bayer-Group/paquo

PAthological QUpath Obsession - QuPath and Python conversations

digital-pathology python qupath

Last synced: 07 May 2025

https://github.com/biologytools/biogtk

A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

bio-formats biology cross-platform geojson gtk image-stacks imagej imagej-roi imagej-tiff microscopy omero openslide plugins qupath roi sam-2 segment-anything segment-anything-model whole-slide-image

Last synced: 15 May 2025

https://github.com/aignostics/python-sdk

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

aignostics atlas dicom digital-pathology image-data-commons machine-learning marimo medical-imaging nicegui oe-python-template openslide pydantic pydicom qupath typer uv whole-slide-imaging

Last synced: 10 Mar 2026

https://github.com/dkurt/qupath-extension-openvino

Intel OpenVINO extension for QuPath, a digital pathology platform

deep-learning digital-pathology intel java openvino qupath stardist

Last synced: 15 Sep 2025

https://github.com/biologytools/biolib

A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions.

geojson imagej imagej-macro imagej-roi omero omero-server qupath

Last synced: 31 Jan 2026

https://github.com/uw-loci/qupath-extension-image-export-toolkit

QuIET - QuPath Image Export Toolkit: batch export images for ML training and analysis

bioimage-analysis image-export machine-learning microscopy publication-figures quarep-limi qupath qupath-extension

Last synced: 02 May 2026

https://github.com/camlloyd/qupath-extension-controller

A QuPath extension for viewing and annotating images with a game controller

digital-pathology qupath

Last synced: 20 Jun 2026

https://github.com/sbalci/qupath-extension-workshop

QuPath Atölye Scriptleri — Patologlar için QuPath workshop'unun yedi Groovy scriptini tek-tıkla menü olarak paketleyen QuPath uzantısı.

image image-analysis pathology plugin qupath workshop

Last synced: 29 May 2026