Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/open-pathology/awesome-pathology
Awesome List of Digital and Computational Pathology Resources
awesome awesome-list computational-pathology digital-pathology heathcare histopathology histopathology-image-analysis histopathology-images histopathology-wsi pathology whole-slide-imaging
Last synced: 14 May 2024
https://github.com/mahmoodlab/CPATH_demographics
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
ai-bias-testing ai-fairness ai-health ai4health ai4health-bias algorithimic-fairness bias-fairness-metrics computational-pathology demographic-bias digital-pathology ebrains fairness health-disparities pathology-bias pathology-disparities quantitative-pathology tcga-data
Last synced: 12 May 2024
https://github.com/ImagingDataCommons/slim
Interoperable web-based slide microscopy viewer and annotation tool
dicomweb digital-pathology idc-viewers oidc react
Last synced: 12 May 2024
https://github.com/EIDOSLAB/torchstain
Stain normalization tools for histological analysis and computational pathology
computational-pathology digital-pathology histopathology medical-imaging numpy python pytorch stain-normalization tensorflow
Last synced: 12 May 2024
https://github.com/srinidhiPY/SSL_CR_Histo
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
annotation-efficient breastpathq camelyon16 deep-learning digital-pathology histopathology self-supervised-learning semi-supervised-learning teacher-student-training
Last synced: 12 May 2024
https://github.com/mahmoodlab/CONCH
A vision-language foundation model for computational pathology - Nature Medicine
bioimage-analysis bioimage-informatics computational-pathology conch digital-pathology foundation-model health-informatics histopathology mahmoodlab medical-imaging nature-medicine nlp-machine-learning pathology quantitative-pathology vision-language-pathology
Last synced: 12 May 2024
https://github.com/mahmoodlab/CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
bioimage-informatics camelyon16 camelyon17 clam computational-pathology data-efficient deep-learning digital-pathology histopathology mahmoodlab pathology quantitative-pathology tcga-data weakly-supervised-learning whole-slide-imaging
Last synced: 12 May 2024
https://github.com/dazhangyu123/ACMIL
WSI classification
acmil bracs camelyon16 computational-pathology digital-pathology histopathology multiple-instance-learning pathology-image weakly-supervised-learning whole-slide-image
Last synced: 12 May 2024
https://github.com/rapidsai/cucim
cuCIM - RAPIDS GPU-accelerated image processing library
computer-vision cuda digital-pathology gpu image-analysis image-data image-processing medical-imaging microscopy multidimensional-image-processing nvidia segmentation
Last synced: 12 May 2024
https://github.com/TissueImageAnalytics/tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
cell-classification cell-segmentation computational-pathology deep-learning digital-pathology histopathology image-analysis machine-learning medical-image-analysis python stain-normalization tissue-analysis tissue-segmentation whole-slide-imaging
Last synced: 12 May 2024
https://github.com/Bayer-Group/paquo
PAthological QUpath Obsession - QuPath and Python conversations
digital-pathology python qupath
Last synced: 07 May 2024
https://github.com/Dana-Farber-AIOS/pathml
Tools for computational pathology
biomedical-image-processing computational-pathology deep-learning digital-pathology fluorescence-microscopy-imaging histopathology image-analysis machine-learning microscopy pathml pathology python pytorch research spatial-transcriptomics
Last synced: 07 May 2024
https://github.com/AICAN-Research/FAST-Pathology
⚡ Open-source software for deep learning-based digital pathology
computational-pathology convolutional-neural-networks cplusplus deep-learning deployment digital-pathology fastpathology free-to-use inference machine-learning opencl opengl openvino pytorch software tensorflow tensorrt
Last synced: 07 May 2024
https://github.com/qupath/qupath
QuPath - Bioimage analysis & digital pathology
bioimage-analysis bioimage-informatics cell-analysis cell-segmentation computational-pathology digital-pathology groovy histology image-processing imagej javafx machine-learning opencv pathology tissue-microarray-analysis whole-slide-imaging
Last synced: 13 Apr 2024
