https://github.com/qupath/qupath

QuPath - Open-source bioimage analysis for research

bioimage-analysis bioimage-informatics cell-analysis cell-segmentation computational-pathology digital-pathology groovy histology image-processing imagej javafx machine-learning opencv pathology tissue-microarray-analysis whole-slide-imaging

Last synced: 14 May 2025

https://github.com/allencellmodeling/torch_integrated_cell

biolog cell-analysis machine-learning neural-network torch

Last synced: 18 Jul 2025

https://github.com/allencellmodeling/pytorch_integrated_cell

Integrated Cell project implemented in pytorch

autoencoder cell-analysis cell-biology generative-adversarial-network machine-learning neural-networks python pytorch science-research

Last synced: 30 Apr 2025

https://github.com/geometric-intelligence/cellgeometry

A web-based application for Cell Shape Analysis.

bioinformatics cell-analysis cell-biology cell-geometry geometry image-processing machine-learning streamlit

Last synced: 06 Apr 2026

https://github.com/insightsoftwareconsortium/itkbiocell

This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.

biological-data-analysis cell-analysis itk-module

Last synced: 04 Jul 2025