Projects in Awesome Lists by qupath
A curated list of projects in awesome lists by qupath .
https://github.com/qupath/qupath
QuPath - Open-source bioimage analysis for research
bioimage-analysis bioimage-informatics cell-analysis cell-segmentation computational-pathology digital-pathology groovy histology image-processing imagej javafx machine-learning opencv pathology tissue-microarray-analysis whole-slide-imaging
Last synced: 12 Apr 2025
https://github.com/qupath/qupath-extension-stardist
QuPath extension to run StarDist nucleus detection
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-align
QuPath extension to interactively align images
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-instanseg
The official QuPath extension for InstanSeg
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-template
Template to help create a new QuPath extension
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-wsinfer
QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
Last synced: 08 Apr 2025
https://github.com/qupath/qubalab
Lab for quantitative bioimage analysis experiments in Python
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-omero-web
QuPath extension to work with images through OMERO's web API
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-tensorflow
Use TensorFlow from QuPath
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-djl
A QuPath extension for working with Deep Java Library (https://djl.ai)
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-fxtras
Reusable JavaFX tools for QuPath (and beyond)
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-bioimageio
A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-extension-omero
QuPath extension to work with images through OMERO's APIs
Last synced: 08 Apr 2025
https://github.com/qupath/embo
QuPath workshop as part of the EMBO Advanced Methods in Bioimage Analysis course 2021
Last synced: 16 Feb 2025
https://github.com/qupath/qupath-bioimage-io
QuPath resources for Bioimage.IO
Last synced: 16 Feb 2025
https://github.com/qupath/qupath-extension-training
A QuPath extension to help with learning the software
Last synced: 15 Apr 2025
https://github.com/qupath/c-blosc-jars
JAR files for the c-blosc native library.
Last synced: 16 Feb 2025
https://github.com/qupath/qupath-extension-jpen
QuPath extension using JPen for graphics tablet input
Last synced: 08 Apr 2025
https://github.com/qupath/qupath-bioimageio-spec
Support for parsing the BioImage Model Zoo spec in Java
Last synced: 16 Feb 2025
https://github.com/qupath/qupath-gradle-plugin
Gradle plugins to help create QuPath extensions
Last synced: 28 Feb 2025
https://github.com/qupath/qupath-extension-py4j
A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)
Last synced: 28 Feb 2025
https://github.com/qupath/qupath-catalog
The catalog containing the QuPath extensions developed by the QuPath team
Last synced: 28 Feb 2025
https://github.com/qupath/extension-manager
A manager for catalogs and extensions.
Last synced: 28 Feb 2025