Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

https://github.com/jianhuupenn/SpaGCN

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

graph-convolutional-network spatial-domains spatial-transcriptomics spatially-variable-genes

Last synced: 28 Jun 2024

https://github.com/lhc17/HoloNet

HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes

bioinformatics cell-cell-communication python spatial-transcriptomics

Last synced: 17 Jun 2024

https://github.com/euxhenh/cellar

Interactive software tool for the assignment of cell types in single-cell studies.

clustering codex genomics genomics-visualization gui python sc-atac-seq sc-rna-seq singlecell spatial-transcriptomics

Last synced: 16 Jun 2024

https://github.com/ZJUFanLab/bulk2space

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

bulk-sequencing deep-learning scrna-seq spatial-transcriptomics

Last synced: 15 Jun 2024