Projects in Awesome Lists tagged with 10xgenomics
A curated list of projects in awesome lists tagged with 10xgenomics .
https://github.com/bcgsc/arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
10xgenomics assembler bioinformatics c-plus-plus genome graph nanopore-sequencing oxford-nanopore pacbio-data scaffold science
Last synced: 10 Apr 2025
https://github.com/lieberinstitute/spatiallibd
Code for the spatialLIBD R/Bioconductor package and shiny app
10xgenomics bioconductor golem rstats shiny spatial-transcriptomics spatialexperiment spatiallibd visium
Last synced: 05 Apr 2025
https://github.com/lieberinstitute/humanpilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
10xgenomics analysis biorxiv brain dlpfc human rstats spatial-transcriptomics visium
Last synced: 23 Mar 2025
https://github.com/bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
10xgenomics bioinformatics bioinformatics-tool genome-assembly genome-scaffolding linked-reads misassembly-correction
Last synced: 15 Apr 2025
https://github.com/epigen/scrnaseq_processing_seurat
A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
10xgenomics bioinformatics biomedical-data-science cite-seq sccrispr-seq scrna-seq single-cell snakemake snrna-seq visualization workflow
Last synced: 15 Apr 2025
https://github.com/wtsi-hpag/Scaff10X
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
10xgenomics assembly bioinformatics breaking genome genomics scaffolding
Last synced: 14 Mar 2025
https://github.com/bcgsc/physlr
:chains: Construct a Physical Map from Linked Reads
10xgenomics bioinformatics bioinformatics-tool genome-assembly genome-scaffolding linked-reads
Last synced: 07 May 2025
https://github.com/morispi/LRez
Standalone tool and library allowing to work with barcoded linked-reads
10x 10x-genomics 10xgenomics barcode barcodes bioinformatics haplotagging index linked linked-reads reads stlfr tell-seq
Last synced: 14 Mar 2025
https://github.com/alleninstitute/scrattch.io
Functions for handling RNA-seq files and formats as input and output for scrattch functions.
10xgenomics hdf5 loom r tome transcriptomics
Last synced: 11 Apr 2025
https://github.com/slowkow/saturation
:sponge: Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
10xgenomics bioinformatics gene-expression ngs-analysis vdj
Last synced: 03 Dec 2024
https://github.com/morispi/LEVIATHAN
Linked-reads based structural variant caller with barcode indexing
10xgenomics barcodes linked-reads structural-variation svs
Last synced: 14 Mar 2025
https://github.com/sjackman/tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
10xgenomics bioinformatics bioinformatics-analysis genome-assembly genome-scaffolding linked-reads misassembly-correction
Last synced: 15 Mar 2025
https://github.com/lieberinstitute/visiumstitched
R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
10xgenomics bioconductor rstats spatial-transcriptomics spatialexperiment spatiallibd visium
Last synced: 23 Mar 2025
https://github.com/sjackman/tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
10xgenomics bioinformatics genome-assembly genome-scaffolding linked-reads manuscript misassembly-correction
Last synced: 15 Mar 2025