Projects in Awesome Lists tagged with hdf5
A curated list of projects in awesome lists tagged with hdf5 .
https://github.com/vaexio/vaex
Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀
bigdata data-science dataframe hdf5 machine-learning machinelearning memory-mapped-file pyarrow python tabular-data visualization
Last synced: 11 May 2025
https://github.com/saulpw/visidata
A terminal spreadsheet multitool for discovering and arranging data
cli csv datajournalism datawrangling devops-tools eda hdf5 json opendata pandas python reconciliation spreadsheet sqlite tabular-data tsv tui unix-toolkit
Last synced: 13 May 2025
https://github.com/rburkholder/trade-frame
C++ 17 based library (with sample applications) for testing equities, futures, etfs & options based automated trading ideas using DTN IQFeed real time data feed and Interactive Brokers (IB TWS API) for trade execution. Some support for Alpaca & Phemex. Notifications via Telegram
algo-trading alpaca c-plus-plus dtn finance futures greeks hdf5 high-frequency-trading iqfeed luajit market-data option-pricing options options-trading phemex telegram-bot trading trading-platform tws-api
Last synced: 30 Mar 2025
https://github.com/juliaio/hdf5.jl
Save and load data in the HDF5 file format from Julia
data-storage hacktoberfest hdf5 hdf5-binaries hdf5-files hdf5-library jld julia julia-language mat
Last synced: 14 May 2025
https://github.com/JuliaIO/HDF5.jl
Save and load data in the HDF5 file format from Julia
data-storage hacktoberfest hdf5 hdf5-binaries hdf5-files hdf5-library jld julia julia-language mat
Last synced: 10 May 2025
https://github.com/tbeu/matio
MATLAB MAT File I/O Library
c file-format hdf5 mat-files matlab zlib
Last synced: 08 Apr 2025
https://github.com/neurojson/jsonlab
JSONLab: compact, portable, robust JSON/binary-JSON encoder/decoder for MATLAB/Octave
binary-data binary-json bjdata data-exchange decoding encoding hdf5 hierarchical-data jmesh jnifti jsnirf json matlab messagepack neurojson serialization ubjson
Last synced: 15 May 2025
https://github.com/NeuroJSON/jsonlab
JSONLab: compact, portable, robust JSON/binary-JSON encoder/decoder for MATLAB/Octave
binary-data binary-json bjdata data-exchange decoding encoding hdf5 hierarchical-data jmesh jnifti jsnirf json matlab messagepack neurojson serialization ubjson
Last synced: 31 Jan 2025
https://github.com/gnudatalanguage/gdl
GDL - GNU Data Language
antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization
Last synced: 07 Apr 2025
https://github.com/uchicago-cs/deepdish
Flexible HDF5 saving/loading and other data science tools from the University of Chicago
deep-learning hdf5 pickle python
Last synced: 01 Apr 2025
https://github.com/llnl/conduit
Simplified Data Exchange for HPC Simulations
cpp data-management fortran hdf5 hpc json llnl python radiuss scientific-computing yaml
Last synced: 16 May 2025
https://github.com/LLNL/conduit
Simplified Data Exchange for HPC Simulations
cpp data-management fortran hdf5 hpc json llnl python radiuss scientific-computing yaml
Last synced: 26 Mar 2025
https://github.com/open2c/cooler
A cool place to store your Hi-C
3d-genome bioinformatics chromatin contact-matrix cooler file-format genomics hdf5 hi-c ngs python sparse
Last synced: 15 May 2025
https://github.com/scikit-hep/awkward-0.x
Manipulate arrays of complex data structures as easily as Numpy.
analysis apache-arrow arrow big-data columnar columnar-storage hdf5 numpy parquet python python3 root root-cern scikit-hep
Last synced: 21 Jan 2025
https://github.com/rootpy/rootpy
A pythonic interface for the ROOT libraries on top of the PyROOT bindings.
cern hdf5 hep matplotlib numpy python root
Last synced: 05 Apr 2025
https://github.com/h5netcdf/h5netcdf
Pythonic interface to netCDF4 via h5py
Last synced: 01 May 2025
https://github.com/neurodatawithoutborders/pynwb
A Python API for working with Neurodata stored in the NWB Format
cross-platform data-format hdf hdf5 neurodata-without-borders neuroscience nwb nwb-n open-data open-science open-source pynwb python reproducible-research
Last synced: 15 May 2025
https://github.com/titusjan/argos
Argos: a data viewer that can read HDF5, NetCDF4, and other file formats.
argos hdf hdf5 image-plots netcdf4 plot
Last synced: 27 Nov 2024
https://github.com/unidata/awips2
Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.
awips awips-data cave data-server data-visualization edex forecasting foss gempak hdf5 hibernate httpd-server java meteorology postgresql python python-awips spring
Last synced: 04 Apr 2025
https://github.com/Unidata/awips2
Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.
awips awips-data cave data-server data-visualization edex forecasting foss gempak hdf5 hibernate httpd-server java meteorology postgresql python python-awips spring
Last synced: 27 Nov 2024
https://github.com/unidata/netcdf-java
The Unidata netcdf-java library
cdm geodata geoscience grib hacktoberfest hdf4 hdf5 java ncml netcdf netcdf-java netcdf-markup-language thredds-catalogs unidata
Last synced: 16 May 2025
https://github.com/silx-kit/h5web
React components for data visualization and exploration
data-visualization hdf5 react visualization
Last synced: 05 Apr 2025
https://github.com/silx-kit/silx
silx toolkit
beamline cython experiments gui hdf5 plotting python-library python3 qt science synchrotron
Last synced: 15 May 2025
https://github.com/openpmd/openpmd-api
:floppy_disk: C++ & Python API for Scientific I/O
adios cpp17 file-handling hdf5 hpc metadata mpi opendata openpmd openscience python3 research
Last synced: 15 Apr 2025
https://github.com/FlowModelingControl/flowtorch
flowTorch - a Python library for analysis and reduced-order modeling of fluid flows
cnm csv davis dmd dynamic-mode-decomposition hdf5 ipsp jupyter machine-learning netcdf openfoam pod proper-orthogonal-decomposition pytorch tau
Last synced: 10 May 2025
https://github.com/ess-dmsc/h5cpp
C++ wrapper for the HDF5 C-library
h5cpp hdf5 hierarchical-data wrapper
Last synced: 04 Apr 2025
https://github.com/gjbex/training-material
A collection of code examples as well as presentations for training purposes
c c-plus-plus cpp debugging fortran gpu hdf5 hpc linux-tools math mpi netcdf4 openmp optimization profiling python sql training-materials virtualization visualization
Last synced: 22 Nov 2024
https://github.com/hdfgroup/hsds
Cloud-native, service based access to HDF data
asyncio aws data-analysis docker hdf5 multi-dimensional python scientific-data
Last synced: 05 Apr 2025
https://github.com/jupyterlab/jupyterlab-hdf5
Open and explore HDF5 files in JupyterLab. Can handle very large (TB) sized files, and datasets of any dimensionality
hdf5 hdf5-dataset hdf5-filebrowser high-dimensional jupyter jupyterlab jupyterlab-2 jupyterlab-extension labextension
Last synced: 12 Apr 2025
https://github.com/geospace-code/h5fortran
Lightweight HDF5 polymorphic Fortran: h5write() h5read()
fortran hdf5 object-oriented-fortran
Last synced: 01 Mar 2025
https://github.com/usnistgov/h5wasm
A WebAssembly HDF5 reader/writer library
browser hdf5 javascript nodejs wasm webassembly zero-dependency
Last synced: 06 Apr 2025
https://github.com/davidace/h5pp
A C++17 interface for HDF5
binary-storage cmake cpp17 eigen eigen3 hdf5 hdf5-library hdf5-wrapper header-only spdlog storage
Last synced: 02 May 2025
https://github.com/xtensor-stack/xtensor-io
xtensor plugin to read and write images, audio files, numpy (compressed) npz and HDF5
audio-files compressed cpp hdf5 image-files io npz numpy xtensor
Last synced: 08 May 2025
https://github.com/doi-usgs/geobipy
Geophysical Bayesian Inference in Python. Docs:
bayesian bayesian-inference geophysics h5py hdf5 mcmc mpi mpi4py parallel trans-dimensional
Last synced: 04 Apr 2025
https://github.com/hdfgroup/hdf5-json
Specification and tools for representing HDF5 in JSON
cloud-computing datacube file-format hdf5 json machine-learning
Last synced: 04 Apr 2025
https://github.com/iannesbitt/readgssi
python tool to read and plot Geophysical Survey Systems Incorporated (GSSI) radar data
dzt georadar gpr ground-penetrating-radar gssi hdf5 plot python2 python3
Last synced: 09 Apr 2025
https://github.com/silx-kit/jupyterlab-h5web
A JupyterLab extension to explore and visualize HDF5 file contents. Based on https://github.com/silx-kit/h5web.
hdf5 jupyterlab jupyterlab-extension visualization
Last synced: 30 Apr 2025
https://github.com/mojaveazure/loomr
An R-based interface for loom files
hdf5 loom loom-files r single-cell-genomics single-cell-rna-seq
Last synced: 14 Apr 2025
https://github.com/garrison/eigen3-hdf5
Bare-bones hdf5 serialization of Eigen matrices and vectors
Last synced: 21 Mar 2025
https://github.com/huber-group-embl/rhdf5
Package providing an interface between HDF5 and R
Last synced: 09 Apr 2025
https://github.com/ami-iit/matio-cpp
A C++ wrapper of the matio library, with memory ownership handling, to read and write .mat files.
cmake cpp cpp14 cxx cxx14 eigen hdf5 mat mat-files matio matio-cpp matlab matlab-mat matlab-matrix ndimensional-arrays octave
Last synced: 09 Apr 2025
https://github.com/grimbough/rhdf5
Package providing an interface between HDF5 and R
Last synced: 18 Mar 2025
https://github.com/pkestene/ramsesgpu
Astrophysics MHD simulation code optimized for large cluster of GPU
astrophysics cea cfd conservation-law cuda euler-equations finite-volume gpu gpu-computing hdf5 hpc kelvin-helmholtz-instability magnetohydrodynamics mhd muscl-hancock parallel-computing pnetcdf rayleigh-taylor shearing-box turbulence
Last synced: 17 Mar 2025
https://github.com/gauteh/hidefix
🐕 Concurrent HDF5 and NetCDF4 reader
concurrency experimental hdf5 multi-threaded netcdf performance rust
Last synced: 05 Apr 2025
https://github.com/LiorBanai/HDF5-CSharp
C# wrapper for windows/Linux systems for reading and writing H5 files
Last synced: 02 Apr 2025
https://github.com/llnl/h5z-zfp
A registered ZFP compression plugin for HDF5
compression hdf5 lossy-compression plugin zfp-library
Last synced: 05 Apr 2025
https://github.com/hpc-io/h5bench
A benchmark suite for measuring HDF5 performance.
Last synced: 26 Mar 2025
https://github.com/nanoporetech/vbz_compression
VBZ compression plugin for nanopore signal data
Last synced: 06 Apr 2025
https://github.com/silx-kit/vscode-h5web
VSCode extension to explore and visualize HDF5 files
Last synced: 12 Apr 2025
https://github.com/nvladimus/npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
Last synced: 13 Apr 2025
https://github.com/weiji14/deepicedrain
Mapping and monitoring deep subglacial water activity in Antarctica using remote sensing and machine learning, with ICESat-2!
analysis-ready-data antarctica big-data binder datashader hdf5 ice-sheet icesat-2 intake jupyter-lab open-science pygmt python3 zarr
Last synced: 30 Apr 2025
https://github.com/jterwin/HDF5_utils
my own Fortran high level interface for HDF5
Last synced: 20 Nov 2024
https://github.com/rsharp-lang/R-sharp
R# language is a kind of R liked vectorized language implements on .NET environment for the bioinformatics data analysis
bioinformatics gcmodeller graphquery hdf5 hpc machine-learning microsoft-visualbasic netcdf parallel-computing r r-sharp vb
Last synced: 04 Dec 2024
https://github.com/pycroscopy/pyusid
Framework for storing, visualizing, and processing Universal Spectroscopic and Imaging Data (USID)
data hdf5 imaging parallel-computing spectroscopy
Last synced: 11 Apr 2025
https://github.com/victorsndvg/xh5for
XDMF parallel partitioned mesh I/O on top of HDF5
fortran hdf5 io mesh mpi object-oriented parallel scalable xdmf
Last synced: 18 Feb 2025
https://github.com/gauteh/dars
𓃢 A fast and light OPeNDAP server
asynchronous dap hdf5 netcdf opendap rust
Last synced: 19 Dec 2024
https://github.com/silx-kit/h5grove
h5grove is a Python package that provides utilities to design backends serving HDF5 file content: attributes, metadata and data.
Last synced: 12 Apr 2025
https://github.com/geospace-code/h5fortran-mpi
HDF5-MPI parallel Fortran object-oriented interface
fortran hdf5 mpi mpi-applications object-oriented-fortran
Last synced: 01 Mar 2025
https://github.com/linkml/linkml-store
wrapper for multiple linkml storage engines
data-lake data-stack database-wrapper duckdb hdf5 linkml mongo mongodb nosql-database rdf semweb triplestore vector-database
Last synced: 23 Apr 2025
https://github.com/neurodatawithoutborders/nwb_hackathons
Repository for collecting materials from nwb hackathons
dataformat hackathon hdf hdf5 international-conference neurodata-without-borders neuroscience nwb nwb-n open-data open-science open-source pynwb python reproducible-research
Last synced: 16 Dec 2024
https://github.com/m-rossi/hdf5widget
This is hdf5widget, a widget for viewing the contents of a HDF5-file in Jupyter Notebooks using ipywidgets.
hdf5 ipywidgets jupyter-notebook python
Last synced: 10 Feb 2025
https://github.com/gjbex/scientific-python
Repository for participants of the "Scientific Python" training
hdf5 holoviews matplotlib matplotlib-tutorial numpy numpy-tutorial opencv python python-training scientific-computing scientific-visualization scipy scipy-tutorial sympy-tutorial training visualization
Last synced: 22 Nov 2024
https://github.com/0101011/analitika
Testing Automatic Text Summarization
hdf5 machine-learning natural-language-processing nlp nlp-machine-learning pickle python tokenizer transformers
Last synced: 12 May 2025
https://github.com/scivision/pibayer
Acquire RAW Bayer-masked images with Raspberry Pi camera (before demosaicking) in Python
bayer-mask geoscience hdf5 python raspberry-pi raspberry-pi-camera tiff
Last synced: 29 Mar 2025
https://github.com/salehjg/Shapenet2_Preparation
A python script to convert and down-sample mesh data into pointclouds using FPS algorithm.
data-preparation dataset farthest-point-sampling hdf5 python shapenet-dataset shapenetcore
Last synced: 20 Mar 2025
https://github.com/saalfeldlab/n5-ij
ImageJ convenience layer for N5
fiji fiji-plugin hdf5 n5 ome-zarr-converter zarr
Last synced: 16 Apr 2025
https://github.com/silx-kit/myhdf5
Online service to explore and visualise HDF5 files
Last synced: 12 Apr 2025
https://github.com/rte-antares-rpackage/antaresRead
Import, manipulate and explore the results of an Antares simulation
adequacy bilan electricity energy hdf5 linear-algebra monte-carlo-simulation optimisation previsionnel r rhdf5 rte simulation tyndp
Last synced: 07 May 2025
https://github.com/goatcheesesaladwithpeanutoildressing/Keras-HDF5-ImageDataGenerator
Blazing fast HDF5 Image Generator for Keras :zap:
Last synced: 11 Feb 2025
https://github.com/kxsystems/hdf5
A library for converting between kdb+ and HDF5 data
Last synced: 12 Apr 2025
https://github.com/rte-antares-rpackage/antaresread
Import, manipulate and explore the results of an Antares simulation
adequacy bilan electricity energy hdf5 linear-algebra monte-carlo-simulation optimisation previsionnel r rhdf5 rte simulation tyndp
Last synced: 26 Apr 2025
https://github.com/KxSystems/hdf5
A library for converting between kdb+ and HDF5 data
Last synced: 02 May 2025
https://github.com/vensing/fy4a
A demo of parse fengyun4 satellite HDF5 file and output a color enhance satellite image ⛅
Last synced: 10 Apr 2025
https://github.com/ovh/serving-runtime
Exposes a serialized machine learning model through a HTTP API.
hdf5 inference machine-learning onnx serving tensorflow
Last synced: 08 Apr 2025
https://github.com/alleninstitute/scrattch.io
Functions for handling RNA-seq files and formats as input and output for scrattch functions.
10xgenomics hdf5 loom r tome transcriptomics
Last synced: 11 Apr 2025
https://github.com/geospace-code/matlab-stdlib
HDF5, NetCDF4, fileio, system functions that act as an unofficial "stdlib" for Matlab.
Last synced: 02 May 2025
https://github.com/nens/threedigrid
grid administration for 3Di models
hdf5 hydrological-modelling library spatial-data threedi
Last synced: 05 May 2025
https://github.com/risteon/hdf5-to-tfrecord
:floppy_disk: Convert .hdf5 files to TFRecords
Last synced: 12 Apr 2025
https://github.com/kaschau/PEREGRINE
3D Multiblock multiphysics finite volume reacting flow solver. Implemented in Python, Kokkos, and MPI for inter- and intra-node performant parallelism.
cfd gpu-computing hdf5 kokkos parallel-computing paraview python scientific-computing
Last synced: 10 Mar 2025
https://github.com/davidssmith/ra
RawArray file format reference implementation
c data data-structures dimensions hdf5 hdf5-format julia library matlab metadata python ra-format storage-container
Last synced: 07 May 2025
https://github.com/huber-group-embl/rhdf5lib
Distribution of the HDF5 library in an R package
bioconductor hdf5 hdf5-library
Last synced: 28 Apr 2025
https://github.com/grimbough/rhdf5lib
Distribution of the HDF5 library in an R package
bioconductor hdf5 hdf5-library
Last synced: 23 Mar 2025
https://github.com/gaomy3832/zsimparse
Python utilities to parse zsim simulation results
Last synced: 26 Mar 2025
https://github.com/iraikov/neuroh5
An HDF5-based library for parallel I/O operations on data structures for large-scale neural networks
distributed-computing hdf5 mpi mpi-applications mpi-io neuron neuronal-network parallel-io
Last synced: 03 Dec 2024
https://github.com/huber-group-embl/rhdf5filters
Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.
compression filter-plugin hdf5 rpackage
Last synced: 23 Apr 2025
https://github.com/Huber-group-EMBL/rhdf5filters
Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.
compression filter-plugin hdf5 rpackage
Last synced: 17 Apr 2025
https://github.com/petrkryslucsd/datadrop.jl
Numbers and matrices and strings stored to disk and retrieved again.
hdf5 json julia matrix persistent-storage
Last synced: 30 Dec 2024
