https://github.com/nvladimus/npy2bdv

Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.

bigdataviewer h5 hdf5 numpy

Last synced: 13 Apr 2025

https://github.com/nvladimus/daospim

daoSPIM microscope project: software and hardware

adaptive-optics light-sheet-microscopy spim

Last synced: 02 Mar 2025

https://github.com/nvladimus/kekse

Rapid GUI building for instrument control (PyQt5 based)

control microscope modular plugin

Last synced: 02 Mar 2025

https://github.com/nvladimus/wfs

LabVIEW and Python control of a (Thorlabs) Shack-Hartmann sensor

adaptive labview optics python

Last synced: 02 Mar 2025

https://github.com/nvladimus/zebrafishbrainregistration_zbrain_ants

Non-rigid registration of zebrafish brains to the Z-Brain Atlas using ANTs

Last synced: 02 Mar 2025

https://github.com/nvladimus/rapidcell

Multiscale modeling of E.coli chemotaxis

bacteria chemotaxis modeling

Last synced: 02 Mar 2025

https://github.com/nvladimus/lens-testing

Code for optical lens testing

Last synced: 02 Mar 2025

https://github.com/nvladimus/itk_sandbox

Registration and deconvolution of 3/4D microscopy images using simpleITK

Last synced: 02 Mar 2025

https://github.com/nvladimus/mirao-lv-driver

Mirao 52e deformable mirror driver (API) imported into LabView

adaptive-optics deformable-mirror drivers labview mirao-52e

Last synced: 02 Mar 2025

https://github.com/nvladimus/zebrafishfunctionalmaps_linearregression

Computing functional maps in zebrafish brain

image-processing light-sheet linear-regression thunder zebrafish

Last synced: 02 Mar 2025

https://github.com/nvladimus/miraocontrol

basic control of Mirao52e deformable mirror

Last synced: 02 Mar 2025

https://github.com/nvladimus/ray_tracer

basic ray tracer

Last synced: 02 Mar 2025

https://github.com/nvladimus/zebrascope_targets

Tools for two-photon ablation using Zebrascope.

Last synced: 02 Mar 2025

https://github.com/nvladimus/pulse_counter

Arduino code for generating DC bias triggered by external device (e.g. camera). PCB design for adding generated DC bias to an input AO signal.

Last synced: 02 Mar 2025

https://github.com/nvladimus/nvladimus.github.io

My personal webpage

hardware-drivers java labview microscopy optics python

Last synced: 02 Mar 2025

https://github.com/nvladimus/zebra-stimul

Code for stimulus presentation and ephys recording.

Last synced: 02 Mar 2025

https://github.com/nvladimus/arduinorotaryencoderpcb

A small PCB for denoising a rotary encoder with LED illuminated shaft

arduino breakout-board debouncing encoder-quadrature pcb

Last synced: 02 Mar 2025