Projects in Awesome Lists tagged with zebrafish
A curated list of projects in awesome lists tagged with zebrafish .
https://github.com/ElisabethKugler/ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
fiji fiji-macro-language image-processing lightsheet microscopy microscopy-data openscience quantification registration segmentation vasculature zebrafish
Last synced: 07 May 2025
https://github.com/obophenotype/zebrafish-phenotype-ontology
A vocabulary for describing Zebrafish Phenotypes
anatomy anatomy-ontology developmental-stages obofoundry ontology zebrafish
Last synced: 16 Apr 2026
https://github.com/gletort/fishfeats
Napari plugin for spatial RNA quantification
3d-segmentation napari-plugin nuclei-segmentation smrna-fish spot-detection zebrafish
Last synced: 10 Apr 2026
https://github.com/oss-slu/cv_zebrafish
CV Zebrafish — a modular software tool to track and analyze zebrafish movements from high-speed imaging. It integrates with DeepLabCut outputs to compute metrics like fin angles, movement timing, speed, and behavior classification
deeplabcut hacktoberfest python zebrafish
Last synced: 18 Jan 2026
https://github.com/carlescn/scrnaseq-tools
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
bash bioinformatics danio-rerio linux scrna-seq zebrafish
Last synced: 12 Apr 2026
https://github.com/nvladimus/zebrafishfunctionalmaps_linearregression
Computing functional maps in zebrafish brain
image-processing light-sheet linear-regression thunder zebrafish
Last synced: 27 Feb 2026
https://github.com/laulauthom/interactive-embedding-kidney
This repo contains the files to generate an interactive view of a feature set in the tensorflow embedding projector interface.
embeddings features screening tensorflow-examples visualization zebrafish zebrafish-phenotypes
Last synced: 20 Jan 2026
