https://github.com/laulauthom/maskfromrois-fiji

Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.

ground-truth image-annotation imagej-plugins roi segmentation

Last synced: 12 Apr 2025

https://github.com/laulauthom/fiji-roiclicktools

Fiji Toolbar tool with Roi that perform measurements, are added to Manager and auto next slice

clickable fiji ground-truth image-annotation imagej region-of-interest roi

Last synced: 04 Mar 2025

https://github.com/laulauthom/haar-cascade-nms

OpenCV Haar cascade with non-maxima suppression

haar-cascade object-detection object-localization opencv

Last synced: 13 Feb 2025

https://github.com/laulauthom/fiji-qualiannotations

Fiji plugins for qualitative image annotations + analysis workflows for image-classification and data-visualization

annotations fiji-plugin ground-truth image-annotation-tool image-classification knime visualization

Last synced: 04 Mar 2025

https://github.com/laulauthom/intensityprofiletoolset-imagej

Toolset providing an interactive X/Y line profile tools and horizontal/vertical profile

Last synced: 04 Mar 2025

https://github.com/laulauthom/w_biaflow-example-cellseg

Last synced: 04 Mar 2025

https://github.com/laulauthom/jythonpackage

Wrapping jython macro script into a jar

Last synced: 04 Mar 2025

https://github.com/laulauthom/objectdetectionexamples-imagej.js

Example of ImageJ macros for object-localization

imagej imagej-js imagej-macro object-detection

Last synced: 04 Mar 2025

https://github.com/laulauthom/ni-usb6008-analog-digital-outputs

This script allows to control analog and digital outputs of a NI-USB-6008 from National Instrument using the PyDAQmx module

analog-devices daq national-instruments pydaqmx

Last synced: 04 Mar 2025

https://github.com/laulauthom/interactive-embedding-kidney

This repo contains the files to generate an interactive view of a feature set in the tensorflow embedding projector interface.

embeddings features screening tensorflow-examples visualization zebrafish zebrafish-phenotypes

Last synced: 07 Apr 2025

https://github.com/laulauthom/knimetgmm_reloaded

Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).

cell-tracking microscopy segmentation tgmm

Last synced: 13 Apr 2025

https://github.com/laulauthom/hello-github-actions

Last synced: 04 Mar 2025

https://github.com/laulauthom/roigrouptable

Helper plugin providing a table to facilitate the setting of the names associated to the Roi-group integer indexes in Fiji

fiji imagej roi

Last synced: 04 Mar 2025

https://github.com/laulauthom/tensorflowtutorial

Last synced: 04 Mar 2025

https://github.com/laulauthom/usb-3101--measurementcomputing

Simple Python script to control analog and digital outputs for a USB-3101 from Measurement Computing

analog-devices daq measurement-computing universal-library

Last synced: 04 Mar 2025