Projects in Awesome Lists tagged with napari-plugin
A curated list of projects in awesome lists tagged with napari-plugin .
https://github.com/biapol/napari-clusters-plotter
A napari plugin for clustering objects according to their properties.
clustering napari-plugin plotting python software
Last synced: 21 Oct 2025
https://github.com/scverse/napari-spatialdata
Interactive visualization of spatial omics data
napari napari-plugin spatial-analysis spatial-omics visualization
Last synced: 07 Jul 2025
https://github.com/saeyslab/harpy
Single-cell spatial omics analysis that makes you happy!
analysis-framework bioinformatics hpc machine-learning microscopy napari-plugin spatial
Last synced: 17 Apr 2026
https://github.com/haesleinhuepf/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
Last synced: 09 Oct 2025
https://github.com/chanzuckerberg/napari-hub
Discover, install, and share napari plugins
analysis bioimaging deep-learning denoising detection imaging machine-learning napari napari-plugin plugins python registration segmentation themes tracking
Last synced: 27 Mar 2026
https://github.com/haesleinhuepf/napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
Last synced: 16 Apr 2025
https://github.com/matplotlib/napari-matplotlib
Linking napari layers with Matplotlib plots
matplotlib napari napari-plugin plotting python
Last synced: 12 Jun 2025
https://github.com/stardist/stardist-napari
StarDist plugin for napari
cell-segmentation deep-learning napari napari-plugin nuclei-segmentation object-detection
Last synced: 22 Feb 2026
https://github.com/tlambert03/napari-omero
Browse your OMERO database from within napari.
Last synced: 07 Apr 2025
https://github.com/clEsperanto/napari_pyclesperanto_assistant
GPU-accelerated general purpose image processing and image analysis in napari
clesperanto image-processing image-segmentation napari napari-plugin pyopencl
Last synced: 08 May 2025
https://github.com/haesleinhuepf/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
Last synced: 14 Aug 2025
https://github.com/haesleinhuepf/napari-process-points-and-surfaces
Process and analyze surfaces using vedo in napari.
Last synced: 14 Apr 2025
https://github.com/brainglobe/cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
cell-detection cellfinder keras napari napari-plugin object-detection resnet tensorflow
Last synced: 01 Oct 2025
https://github.com/haesleinhuepf/napari-simpleitk-image-processing
Process images using SimpleITK in napari
Last synced: 16 Sep 2025
https://github.com/lids-unicamp/grabber
Grabber: A Tool to Improve Convergence in Interactive Image Segmentation
grabber image-foresting-transform image-segmentation livewire napari-plugin
Last synced: 19 Apr 2025
https://github.com/allencell/napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
napari napari-allencell-segmenter napari-plugin
Last synced: 21 Feb 2026
https://github.com/haesleinhuepf/napari-workflow-optimizer
Optimize image processing workflows in napari
Last synced: 12 Aug 2025
https://github.com/brainglobe/brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
Last synced: 21 Oct 2025
https://github.com/polusai/bfio
Interface to the Bioformats Java library
image-io image-processing napari-plugin
Last synced: 14 Mar 2026
https://github.com/janclemenslab/napari-video
Napari plugin for working with video files.
Last synced: 28 Oct 2025
https://github.com/Chris-N-K/napari-time-series-plotter
A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
image-analysis napari napari-plugin napari-visualization plotting python python3 qt time-series time-series-analysis timeseries timeseries-analysis
Last synced: 15 Aug 2025
https://github.com/chris-n-k/napari-time-series-plotter
A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
image-analysis napari napari-plugin napari-visualization plotting python python3 qt time-series time-series-analysis timeseries timeseries-analysis
Last synced: 24 Oct 2025
https://github.com/haesleinhuepf/napari-script-editor
A python script editor plugin for napari
Last synced: 30 Apr 2025
https://github.com/tiledb-inc/napari-tiledb-bioimg
TileDB BioImaging plugin for Napari
bioimaging napari napari-plugin tiledb
Last synced: 10 Apr 2025
https://github.com/gatoniel/napari-3d-ortho-viewer
Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images
Last synced: 21 Oct 2025
https://github.com/haesleinhuepf/napari-blender-bridge
Transfer surface layers between Napari and Blender.
Last synced: 11 Mar 2026
https://github.com/haesleinhuepf/napari-workflow-inspector
Inspect relationships between napari-plugins in active workflows.
Last synced: 30 Apr 2025
https://github.com/samthiele/napari-hippo
A large and somewhat ugly plugin for viewing and analysing hyperspectral data in Napari
gui-application hyperspectral hyperspectral-imaging napari napari-plugin python
Last synced: 10 Aug 2025
https://github.com/insightsoftwareconsortium/napari-itk-io
File IO with itk for napari.
hacktoberfest io itk medical-imaging napari napari-plugin open-source python scientific-computing
Last synced: 13 Apr 2025
https://github.com/hanjinliu/napari-text-layer
Text layer for bio-image annotation.
Last synced: 29 Oct 2025
https://github.com/rdemets/napari-yolov5
napari-plugin object-detection python
Last synced: 21 Feb 2026
https://github.com/hiroalchem/napari-labelimg4classification
A simple image-level annotation tool supporting multi-channel images for napari.
Last synced: 22 Feb 2026
https://github.com/haesleinhuepf/napari-laptrack
Tracking particles in Napari, using the LapTrack library
Last synced: 30 Apr 2025
https://github.com/haesleinhuepf/napari-time-slicer
A meta plugin for processing timelapse data timepoint by timepoint in napari
Last synced: 30 Apr 2025
https://github.com/haesleinhuepf/napari-animated-gif-io
Open and save 3D image stacks as animated gifs in napari
Last synced: 25 Jul 2025
https://github.com/jhnnsrs/faser
A python based toolkit for psf estimation using a vectorial model of the electromagnetic field
bioimage-analysis napari-plugin psf vectorial-model
Last synced: 14 Oct 2025
https://github.com/gletort/fishfeats
Napari plugin for spatial RNA quantification
3d-segmentation napari-plugin nuclei-segmentation smrna-fish spot-detection zebrafish
Last synced: 10 Apr 2026
https://github.com/fmi-faim/napari-save-transformed
Save image layers with their transformation applied
Last synced: 16 Jan 2026
https://github.com/danionella/napari-pyav
PyAV-based video reader plugin for Napari
napari napari-plugin pyav video-reader
Last synced: 26 Jan 2026
https://github.com/hereariim/napari-aphid
This directory contains all the elements and structure of the napari-aphid plugin
ilastik imagej napari-plugin python
Last synced: 03 Jul 2025
https://github.com/hanjinliu/napari-macrokit
Executable script generation for napari plugins
Last synced: 29 Oct 2025
https://github.com/deep-finder/napari-deepfinder
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
cryo-et deep-learning deepfinder napari napari-plugin python
Last synced: 14 Jan 2026
https://github.com/super-resolution/napari-locan
Napari plugin to use locan methods in napari
Last synced: 17 Mar 2026
https://github.com/edgarlefevre/napari-deepmeta
Segment mouse lungs and metastasis on MRI images.
cookiecutter-napari-plugin deeplearning image-segmentation lungs-segmentation mri-images napari napari-plugin tensorflow
Last synced: 20 Jun 2025
https://github.com/epfl-center-for-imaging/napari-magic-wand
"Magic wand" annotation in Napari.
image-annotation napari-plugin
Last synced: 08 Oct 2025
https://github.com/dragadoncila/napari-sentinel-zip
Plugin to allow loading of SENTINEL zips into napari directly
Last synced: 12 Jun 2026
https://github.com/hereariim/napari-pixel-correction
This directory contains the files that make up the napari-pixel-correction module. This module is used to annotate the segmentation masks.
napari-plugin python tensorflow
Last synced: 27 Apr 2026
https://github.com/epfl-center-for-imaging/napari-orientationpy
2D and 3D grayscale orientation analysis in Napari.
image-processing napari-plugin
Last synced: 29 Jan 2026
https://github.com/mbphys/napari-elementary-numpy-operations
A napari plugin covers elementary numpy operations like swap axes, flip, sqeeze an array or rotate an arrays by 90° steps
Last synced: 21 Feb 2026
https://github.com/haesleinhuepf/napari-mouse-controls
Control zoom, slicing and contrast windowing with mouse and touch screen
Last synced: 08 Sep 2025
https://github.com/chili-chiu/napari-labels-overlap
napari-labels-overlap plugin
Last synced: 22 Jul 2025
https://github.com/EPFL-Center-for-Imaging/napari-ortho-plotter
Interactively plot the image intensity along the depth axis of a 3D image dataset.
Last synced: 09 Jan 2026
https://github.com/epfl-center-for-imaging/napari-floodfill
Interactive object annotation in Napari using a flood fill tool.
image-processing napari-plugin
Last synced: 09 Jan 2026
https://github.com/pranjaldhole/napari-labelling-assistant
A lightweight plugin for visualizing labelling statistics.
assistive-technology labelling napari napari-plugin python-3
Last synced: 09 Apr 2025
https://github.com/epfl-center-for-imaging/napari-rembg
AI-based image segmentation in Napari.
image-segmentation napari-plugin rembg segment-anything-model
Last synced: 09 Jan 2026
https://github.com/hectormz/napari-mat-images
A plugin for napari to load images from Matlab's .mat files
Last synced: 23 Feb 2026
https://github.com/yapic/napari-hdf5-labels-io
Napari plugin to store Napari projects in a .h5 file. Label layer are stored in a sparse representation (COO list).
Last synced: 21 Oct 2025
https://github.com/haesleinhuepf/napari-pyfast-image-processing
Use pyFAST's CPU/GPU-accelerated image processing from within napari.
Last synced: 21 Jul 2026
https://github.com/epfl-center-for-imaging/napari-ortho-plotter
Interactively plot the image intensity along the depth axis of a 3D image dataset.
Last synced: 09 May 2026
https://github.com/mbphys/image-part-selecter
A napari plugin in order to select parts of images
Last synced: 24 Feb 2026
https://github.com/hereariim/napari-caphid
Napari-caphid was developed for updating table of quantitative data from images. Napari-caphid was developed by Imhorphen Team ( 🇫🇷 french team of University of Angers and INRAe Angers) for ECLECTIC Team (french team of University of Paris-Saclay and CNRS).
Last synced: 03 Jul 2025
https://github.com/yapic/napari-yapic-prediction
Image segmentation prediction tool that uses trained YAPiC model and performs image segmentation directly in Napari.
Last synced: 21 Feb 2026
https://github.com/epfl-center-for-imaging/mouselungseg
Lungs segmentation in mice CT scans
cancer-imaging-research image-segmentation napari-plugin ultralytics yolo
Last synced: 21 Aug 2025
https://github.com/mbphys/layer-data-replace
A napari plugin in order to replace parts of the data of a layer by another one
Last synced: 19 Feb 2026
https://github.com/epfl-center-for-imaging/napari-label-focus
Easily focus the view on selected elements from a Labels layer.
Last synced: 28 Jan 2026
https://github.com/epfl-center-for-imaging/napari-woggle-opacity
Dynamically change layer opacity in Napari.
Last synced: 29 Jul 2025
https://github.com/epfl-center-for-imaging/mousetumornet
A model for lung tumor nodules segmentation in mice CT scans.
cancer-imaging-research image-segmentation napari-plugin nnunet-v2
Last synced: 15 Sep 2025
https://github.com/epfl-center-for-imaging/napari-remove-objects
A simple tool to remove objects in a Labels layer in Napari by clicking on them.
Last synced: 18 Jun 2026
https://github.com/haesleinhuepf/napari-pillow-image-processing
Process images using pillow from within napari.
Last synced: 24 Jun 2026
https://github.com/arkitektio-apps/mikro-napari
napari within the mikro environment
automation microscopy microscopy-data napari napari-plugin
Last synced: 11 Oct 2025
https://github.com/epfl-center-for-imaging/napari-adaptive-painting
Propagate label annotations in Napari.
image-annotation-tool napari-plugin
Last synced: 06 Mar 2026
https://github.com/epfl-center-for-imaging/napari-live-histogram
Display the image histogram in Napari.
Last synced: 09 Jan 2026
https://github.com/mbphys/offset-subtraction
A napari plugin in oder to subtract an intensity offset such as autofluorescence
Last synced: 14 Jul 2026