Projects in Awesome Lists tagged with napari-plugin
A curated list of projects in awesome lists tagged with napari-plugin .
https://github.com/chanzuckerberg/napari-hub
Discover, install, and share napari plugins
analysis bioimaging deep-learning denoising detection imaging machine-learning napari napari-plugin plugins python registration segmentation themes tracking
Last synced: 10 Apr 2025
https://github.com/haesleinhuepf/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
Last synced: 05 Apr 2025
https://github.com/haesleinhuepf/napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
Last synced: 16 Apr 2025
https://github.com/tlambert03/napari-omero
Browse your OMERO database from within napari.
Last synced: 07 Apr 2025
https://github.com/clEsperanto/napari_pyclesperanto_assistant
GPU-accelerated general purpose image processing and image analysis in napari
clesperanto image-processing image-segmentation napari napari-plugin pyopencl
Last synced: 15 Nov 2024
https://github.com/haesleinhuepf/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
Last synced: 09 Apr 2025
https://github.com/haesleinhuepf/napari-process-points-and-surfaces
Process and analyze surfaces using vedo in napari.
Last synced: 14 Apr 2025
https://github.com/brainglobe/cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
cell-detection cellfinder keras napari napari-plugin object-detection resnet tensorflow
Last synced: 21 Jan 2025
https://github.com/haesleinhuepf/napari-simpleitk-image-processing
Process images using SimpleITK in napari
Last synced: 19 Dec 2024
https://github.com/lids-unicamp/grabber
Grabber: A Tool to Improve Convergence in Interactive Image Segmentation
grabber image-foresting-transform image-segmentation livewire napari-plugin
Last synced: 19 Apr 2025
https://github.com/haesleinhuepf/napari-workflow-optimizer
Optimize image processing workflows in napari
Last synced: 30 Apr 2025
https://github.com/janclemenslab/napari-video
Napari plugin for working with video files.
Last synced: 13 Feb 2025
https://github.com/chris-n-k/napari-time-series-plotter
A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
image-analysis napari napari-plugin napari-visualization plotting python python3 qt time-series time-series-analysis timeseries timeseries-analysis
Last synced: 09 Feb 2025
https://github.com/Chris-N-K/napari-time-series-plotter
A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
image-analysis napari napari-plugin napari-visualization plotting python python3 qt time-series time-series-analysis timeseries timeseries-analysis
Last synced: 16 Dec 2024
https://github.com/haesleinhuepf/napari-script-editor
A python script editor plugin for napari
Last synced: 30 Apr 2025
https://github.com/tiledb-inc/napari-tiledb-bioimg
TileDB BioImaging plugin for Napari
bioimaging napari napari-plugin tiledb
Last synced: 10 Apr 2025
https://github.com/haesleinhuepf/napari-workflow-inspector
Inspect relationships between napari-plugins in active workflows.
Last synced: 30 Apr 2025
https://github.com/haesleinhuepf/napari-blender-bridge
Transfer surface layers between Napari and Blender.
Last synced: 30 Apr 2025
https://github.com/hanjinliu/napari-text-layer
Text layer for bio-image annotation.
Last synced: 14 Feb 2025
https://github.com/insightsoftwareconsortium/napari-itk-io
File IO with itk for napari.
hacktoberfest io itk medical-imaging napari napari-plugin open-source python scientific-computing
Last synced: 13 Apr 2025
https://github.com/haesleinhuepf/napari-laptrack
Tracking particles in Napari, using the LapTrack library
Last synced: 30 Apr 2025
https://github.com/hiroalchem/napari-labelimg4classification
A simple image-level annotation tool supporting multi-channel images for napari.
Last synced: 15 Nov 2024
https://github.com/samthiele/napari-hippo
A large and somewhat ugly plugin for viewing and analysing hyperspectral data in Napari
gui-application hyperspectral hyperspectral-imaging napari napari-plugin python
Last synced: 10 Apr 2025
https://github.com/haesleinhuepf/napari-time-slicer
A meta plugin for processing timelapse data timepoint by timepoint in napari
Last synced: 30 Apr 2025
https://github.com/haesleinhuepf/napari-animated-gif-io
Open and save 3D image stacks as animated gifs in napari
Last synced: 30 Apr 2025
https://github.com/hanjinliu/napari-macrokit
Executable script generation for napari plugins
Last synced: 14 Feb 2025
https://github.com/dragadoncila/napari-sentinel-zip
Plugin to allow loading of SENTINEL zips into napari directly
Last synced: 03 Mar 2025
https://github.com/jhnnsrs/faser
A python based toolkit for psf estimation using a vectorial model of the electromagnetic field
bioimage-analysis napari-plugin psf vectorial-model
Last synced: 31 Jan 2025
https://github.com/edgarlefevre/napari-deepmeta
Segment mouse lungs and metastasis on MRI images.
cookiecutter-napari-plugin deeplearning image-segmentation lungs-segmentation mri-images napari napari-plugin tensorflow
Last synced: 21 Mar 2025
https://github.com/haesleinhuepf/napari-mouse-controls
Control zoom, slicing and contrast windowing with mouse and touch screen
Last synced: 03 Jan 2025
https://github.com/hectormz/napari-mat-images
A plugin for napari to load images from Matlab's .mat files
Last synced: 06 Apr 2025
https://github.com/epfl-center-for-imaging/napari-z-plotter
Interactively plot the image intensity along the depth axis of a 3D image dataset.
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-floodfill
Interactive object annotation in Napari using a flood fill tool.
image-processing napari-plugin
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-rembg
AI-based image segmentation in Napari.
image-segmentation napari-plugin rembg segment-anything-model
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-magic-wand
"Magic wand" annotation in Napari.
image-annotation napari-plugin
Last synced: 19 Feb 2025
https://github.com/pranjaldhole/napari-labelling-assistant
A lightweight plugin for visualizing labelling statistics.
assistive-technology labelling napari napari-plugin python-3
Last synced: 09 Apr 2025
https://github.com/haesleinhuepf/napari-pyfast-image-processing
Use pyFAST's CPU/GPU-accelerated image processing from within napari.
Last synced: 22 Feb 2025
https://github.com/chili-chiu/napari-labels-overlap
napari-labels-overlap plugin
Last synced: 27 Mar 2025
https://github.com/epfl-center-for-imaging/mousetumornet
A model for lung tumor nodules segmentation in mice CT scans.
cancer-imaging-research image-segmentation napari-plugin nnunet-v2
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-orientationpy
Analyze orientations in 2D, 3D, and RGB images in Napari.
image-processing napari-plugin
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-live-histogram
Display the image histogram in Napari.
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-adaptive-painting
Propagate label annotations in Napari.
image-annotation-tool napari-plugin
Last synced: 11 Apr 2025
https://github.com/epfl-center-for-imaging/napari-woggle-opacity
Dynamically change layer opacity in Napari.
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/mouselungseg
Lungs segmentation in mice CT scans
cancer-imaging-research image-segmentation napari-plugin ultralytics yolo
Last synced: 19 Feb 2025
https://github.com/epfl-center-for-imaging/napari-label-focus
Easily focus the view on selected elements from a Labels layer.
Last synced: 11 Apr 2025
https://github.com/arkitektio-apps/mikro-napari
napari within the mikro environment
automation microscopy microscopy-data napari napari-plugin
Last synced: 04 Apr 2025
https://github.com/haesleinhuepf/napari-pillow-image-processing
Process images using pillow from within napari.
Last synced: 22 Feb 2025
https://github.com/epfl-center-for-imaging/napari-remove-objects
A simple tool to remove objects in a Labels layer in Napari by clicking on them.
Last synced: 19 Feb 2025