Projects in Awesome Lists tagged with itk

https://github.com/slicer/slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 14 May 2025

https://github.com/Slicer/Slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 02 Apr 2025

https://github.com/insightsoftwareconsortium/itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing

Last synced: 12 May 2025

https://github.com/InsightSoftwareConsortium/ITK

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing

Last synced: 15 Mar 2025

https://github.com/SimpleITK/SimpleITK

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

c-plus-plus csharp image-analysis image-processing itk java lua python r registration ruby segmentation simpleitk swig tcl

Last synced: 14 May 2025

https://github.com/simpleitk/simpleitk

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

c-plus-plus csharp image-analysis image-processing itk java lua python r registration ruby segmentation simpleitk swig tcl

Last synced: 07 May 2026

https://github.com/Slicer/SlicerGitSVNArchive

:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus cross-platform image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 09 Jul 2025

https://github.com/commontk/CTK

A set of common support code for medical imaging, surgical navigation, and related purposes.

3d-slicer c-plus-plus cross-platform dicom itk medical-imaging mitk open-source osgi plugin-manager python qt vtk

Last synced: 15 Mar 2025

https://github.com/loli/medpy

Medical image processing in Python

2d 3d 4d computed-tomography dicom feature-extraction graph-cut image-classification image-processing image-segmentation itk machine-learning magnetic-resonance-imaging medical medpy mha mhd nifti-format python simpleitk

Last synced: 21 Feb 2026

https://github.com/insightsoftwareconsortium/itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

image-analysis imaging insight-toolkit itk jupyter jupyter-widget jupyterlab-extension kitware medical-visualization meshes open-science open-source point-cloud python reproducible-research scientific-computing scientific-visualization

Last synced: 14 May 2025

https://github.com/InsightSoftwareConsortium/itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

image-analysis imaging insight-toolkit itk jupyter jupyter-widget jupyterlab-extension kitware medical-visualization meshes open-science open-source point-cloud python reproducible-research scientific-computing scientific-visualization

Last synced: 13 Mar 2025

https://github.com/yuanhaogong/curvaturefilter

Curvature Filters are efficient solvers for Variational Models

curvature curvature-filters differential-geometry image-processing itk matlab opencv optimization-algorithms python

Last synced: 06 Apr 2025

https://github.com/YuanhaoGong/CurvatureFilter

Curvature Filters are efficient solvers for Variational Models

curvature curvature-filters differential-geometry image-processing itk matlab opencv optimization-algorithms python

Last synced: 15 Mar 2025

https://github.com/insightsoftwareconsortium/itkelastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

itk itk-module

Last synced: 16 Mar 2026

https://github.com/InsightSoftwareConsortium/itk-wasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

asmjs emscripten imaging input-output insight-toolkit itk itk-module javascript open-science reproducible-science vtk wasi wasm webassembly

Last synced: 10 Apr 2025

https://github.com/insightsoftwareconsortium/itk-wasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

emscripten imaging input-output insight-toolkit itk itk-module javascript open-science reproducible-science visualization wasi wasm webassembly

Last synced: 15 May 2025

https://github.com/dave3d/dicom2stl

Python script to extract a STL surface from a DICOM image series.

dicom dicom-series isosurface itk simpleitk stl stl-surface surface-mesh volume vtk

Last synced: 05 Apr 2025

https://github.com/IRCAD/sight

Surgical Image Guidance and Healthcare Toolkit

c-plus-plus-11 itk medical-application medical-image-processing medical-imaging ogre3d opencv qt5 vr-render vtk

Last synced: 16 Mar 2025

https://github.com/kitwaremedical/slicercustomapptemplate

Template to be used as a starting point for creating a custom 3D Slicer application

3d-slicer 3d-slicer-custom-application c-plus-plus cross-platform image-processing itk kitware medical-image-computing python registration segmentation vtk

Last synced: 07 Apr 2025

https://github.com/kitwaremedical/itkultrasound

ITK module with classes particularly useful for ultrasound.

arfi b-mode c-plus-plus elastography itk itk-module python scan-conversion strain-imaging ultrasound ultrasound-imaging ultrasound-tissue-characterization uspect

Last synced: 05 Apr 2025

https://github.com/antony-jr/insight

A Tcl/Tk Frontend for GDB. This is an AppImage(Portable Package) of insight for the sake of Jeff Duntemann's amazing book.

debugger gdb gui insight itcl itk legacy-support portable tcl tk

Last synced: 10 Apr 2025

https://github.com/fblupi/3dcurator

A 3D Viewer for CTs of Polychromed Wood Sculptures

boost canny-edge-detection cmake computed-tomography ct cultural-heritage dicom direct-volume-rendering gaussian-blur hough-transform itk marching-cubes mean-filter median-filter opencv qt volume volume-ray-casting volume-rendering vtk

Last synced: 20 Aug 2025

https://github.com/insightsoftwareconsortium/itksoftwareguide

Sources for the ITKSoftwareGuide.

books community html image-analysis insight-toolkit itk pdf registration segmentation

Last synced: 04 Jul 2025

https://github.com/Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

bids bids-apps fetal itk mri nipype super-resolution workflow

Last synced: 29 Apr 2025

https://github.com/kitwaremedical/sliceritkultrasound

Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

3d-slicer 3d-slicer-extension arfi insight-toolkit itk ultrasound

Last synced: 10 Apr 2025

https://github.com/insightsoftwareconsortium/itktexturefeatures

Fast, Texture Feature Maps from N-Dimensional Images

cpp features glcm glrlm haralick-features image-processing insight-toolkit itk itk-module python texture

Last synced: 02 Mar 2026

https://github.com/kitwaremedical/itkpocus

An open source library for streaming and preprocessing point-of-care ultrasound video.

image-processing itk itkpocus monai openigtlink point-of-care point-of-care-ultrasound ultrasound

Last synced: 26 Oct 2025

https://github.com/insightsoftwareconsortium/itkcolornormalization

Structure preserving color normalization on H&E images using a reference image

color-normalization cpp image-processing insight-toolkit itk itk-module python

Last synced: 20 Aug 2025

https://github.com/insightsoftwareconsortium/itkgrowcut

ITKGrowCut is a remote module for ITK. It segments a 3D image from user-provided foreground and background seeds.

imaging insight-toolkit itk itk-module

Last synced: 04 Jul 2025

https://github.com/kitwaremedical/dicom-exporter

DICOM file converter in Python

dicom itk python vtk-js

Last synced: 10 Apr 2025

https://github.com/uutzinger/nano_playground

Jetson Nano software installations scripts

install-script itk jetson-nano opencv usb-boot vscode vtk

Last synced: 11 Oct 2025

https://github.com/wenyalintw/level-set-visualizer

Visualize image segmentation based on level set method.

dicom image-processing image-segmentation itk level-set levelset medical-imaging vtk

Last synced: 28 Apr 2025

https://github.com/insightsoftwareconsortium/itkioomezarrngff

ITK IO for images stored in OME-Zarr format.

imaging insight-toolkit itk ome-zarr ome-zarr-converter

Last synced: 04 Jul 2025

https://github.com/kitwaremedical/itkstrain

ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.

itk itk-module strain-imaging strain-tensor

Last synced: 22 Aug 2025

https://github.com/insightsoftwareconsortium/lesionsizingtoolkit

A module for the Insight Toolkit (ITK) that provides a generic, modular, and extensible architecture for lesion sizing algorithms in medical images as well as a reference algorithm for lung solid lesion segmentation in CT images.

computed-tomography insight-toolkit itk itk-module lung-cancer segmentation

Last synced: 08 Oct 2025

https://github.com/agirault/dcm-viewer-js

A lightweight javascript dicom viewer based on vtk.js and itk.js meant to demonstrate how to properly handle image orientation

dicom dicom-viewer itk vtk vtk-js

Last synced: 23 Oct 2025

https://github.com/insightsoftwareconsortium/itkvkfftbackend

VkFFT backends for ITK FFT classes.

cpp cuda fft hip insight-toolkit itk itk-module opencl python vulkan

Last synced: 14 Apr 2025

https://github.com/insightsoftwareconsortium/itkbonemorphometry

ITK filters that quantify bone morphometry

bones cpp insight-toolkit itk itk-module morphometry python

Last synced: 15 Apr 2025

https://github.com/insightsoftwareconsortium/napari-itk-io

File IO with itk for napari.

hacktoberfest io itk medical-imaging napari napari-plugin open-source python scientific-computing

Last synced: 13 Apr 2025

https://github.com/insightsoftwareconsortium/itkringartifact

ITK filters to reduce ring artifacts common in x-ray computed tomography.

computed-tomography image-processing itk itk-module micro-ct ring-artifact

Last synced: 24 Aug 2025

https://github.com/kitwaremedical/itkdicom

Better support for DICOM in ITK.

dcmtk dicom itk itk-module

Last synced: 25 Oct 2025

https://github.com/phcerdan/sgext

Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.

binarization dgtal distance-map generator graph graph-processing hacktoberfest image-processing itk python segmentation skeletonization spatial-graph thin thinning topology vtk

Last synced: 27 Oct 2025

https://github.com/insightsoftwareconsortium/itkndreg

affine-transformation deformable-transformation image-registration insight-toolkit itk itk-module

Last synced: 30 Aug 2025

https://github.com/fblupi/filter-and-view-dicom-directory

Apply some filters to a serie of DICOM files in a directory and view the result

computer-graphics dicom itk qt volume vtk

Last synced: 25 Apr 2026

https://github.com/sciinstitute/itkcleaver

Wrapper for Cleaver to use as an ITK filter

c-plus-plus itk itk-module python

Last synced: 26 Feb 2026

https://github.com/kitwaremedical/sliceritkpython

A Slicer extension for ITK's Python wrapping.

3d-slicer 3d-slicer-extension image-processing itk kitware python registration segmentation

Last synced: 11 Jan 2026

https://github.com/kitwaremedical/itkrleimage

Run-length encoded memory compression scheme for an itk::Image

imaging itk itk-module run-length-encoding

Last synced: 10 Apr 2025

https://github.com/insightsoftwareconsortium/itkfpfh

Fast Point Feature Histogram

cpp feature-extraction icp insight-toolkit itk itk-module matching point-cloud python registration

Last synced: 03 Aug 2025

https://github.com/niklr/animated-medical-imaging

Streamlines the process of generating an optimal subset representing a multi-dimensional medical image and combining the subset to an animated sequence.

csharp dicom docker dotnet itk medical-imaging microservice simpleitk