Projects in Awesome Lists tagged with simpleitk
A curated list of projects in awesome lists tagged with simpleitk .
https://github.com/image-py/imagepy
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
imagej opencv scikit-image simpleitk
Last synced: 15 May 2025
https://github.com/Image-Py/imagepy
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
imagej opencv scikit-image simpleitk
Last synced: 14 Mar 2025
https://github.com/SimpleITK/SimpleITK
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
c-plus-plus csharp image-analysis image-processing itk java lua python r registration ruby segmentation simpleitk swig tcl
Last synced: 14 May 2025
https://github.com/simpleitk/simpleitk
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
c-plus-plus csharp image-analysis image-processing itk java lua python r registration ruby segmentation simpleitk swig tcl
Last synced: 13 May 2025
https://github.com/loli/medpy
Medical image processing in Python
2d 3d 4d computed-tomography dicom feature-extraction graph-cut image-classification image-processing image-segmentation itk machine-learning magnetic-resonance-imaging medical medpy mha mhd nifti-format python simpleitk
Last synced: 05 May 2025
https://github.com/SuperElastix/SimpleElastix
Multi-lingual medical image registration library
elastix image-registration simpleitk
Last synced: 07 May 2025
https://github.com/fitushar/3D-Medical-Imaging-Preprocessing-All-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
3d 3d-padding 3d-preproceing abdomen-ct crop ct-preprocessing medical-image-analysis medical-image-processing medical-imaging mri-preprocessing normalization pre-processing python registration resampling simpleitk
Last synced: 09 May 2025
https://github.com/fitushar/3d-medical-imaging-preprocessing-all-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
3d 3d-padding 3d-preproceing abdomen-ct crop ct-preprocessing medical-image-analysis medical-image-processing medical-imaging mri-preprocessing normalization pre-processing python registration resampling simpleitk
Last synced: 19 Dec 2024
https://github.com/dave3d/dicom2stl
Python script to extract a STL surface from a DICOM image series.
dicom dicom-series isosurface itk simpleitk stl stl-surface surface-mesh volume vtk
Last synced: 05 Apr 2025
https://github.com/BrkRaw/brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
bids bruker converter dataloader nibabel simpleitk
Last synced: 29 Apr 2025
https://github.com/comic/evalutils
evalutils helps users create extensions for grand-challenge.org
docker machine-learning pandas python36 scikit-learn simpleitk
Last synced: 15 May 2025
https://github.com/woctezuma/playing-with-simpleitk
Playing with SimpleITK and nnU-Net to process data from the CHAOS challenge on Google Colab.
chaos colab colab-notebook colab-notebooks colaboratory colabs nn-unet nn-unet-v2 nn-unetv2 nnu-net nnu-net-v2 nnu-netv2 nnunet nnunet-v2 nnunetv2 segmentation simpleitk sitk
Last synced: 06 Dec 2024
https://github.com/pwb97/bspline
Use Bspline in simpleITK to transform images and show the deformation flow
bspline medical-image-registration simpleitk
Last synced: 12 Mar 2025
https://github.com/niklr/animated-medical-imaging
Streamlines the process of generating an optimal subset representing a multi-dimensional medical image and combining the subset to an animated sequence.
csharp dicom docker dotnet itk medical-imaging microservice simpleitk
Last synced: 17 Apr 2025
https://github.com/dave3d/simpleitkwidgets
A package that allows the display of a SimpleITK volumetric image in ITK Widgets.
itk itk-widgets scientific-visualization simpleitk visualization volume-rendering
Last synced: 03 Apr 2025
https://github.com/dyollb/segmantic
Semantic segmentation and image-to-image translation based on AI
image-processing image-segmentation machine-learning medical-image-analysis monai pytorch simpleitk
Last synced: 13 Apr 2025
https://github.com/dyollb/sitk-cli
Wrap SimpleITK functions as command lines
cli image-processing itk python simpleitk
Last synced: 21 Mar 2025
https://github.com/hase3b/bonbid-hie-segmentation
This repository implements a 3D U-Net model for segmenting HIE lesions in neonatal MRI scans, exploring various loss functions including Dice, Dice-Focal, Tversky, Hausdorff Distance, and hybrid loss functions. BONBID-HIE dataset is used for this study.
lesions loss-functions miccai2023 monai multimodality pytorch segmentation simpleitk torchio unet
Last synced: 14 Mar 2025
