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Projects in Awesome Lists tagged with medical-image-processing

A curated list of projects in awesome lists tagged with medical-image-processing .

https://github.com/MIC-DKFZ/medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net

Last synced: 09 May 2025

https://github.com/mic-dkfz/medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net

Last synced: 08 Apr 2025

https://github.com/MontaEllis/Pytorch-Medical-Segmentation

This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.

medical-image-processing pytorch segmentation torchio

Last synced: 19 Jul 2025

https://github.com/dmitryryumin/cvpr-2023-24-papers

CVPR 2023-2024 Papers: Dive into advanced research presented at the leading computer vision conference. Keep up to date with the latest developments in computer vision and deep learning. Code included. ⭐ support visual intelligence development!

action-recognition autonomous-driving biometrics computer-vision cvpr cvpr2023 cvpr2024 datasets deep-learning face-recognition gesture-recognition image-synthesis medical-image-processing multi-modal-learning pattern-recognition scene-analysis segmentation self-supervised-learning shape-analysis video-synthesis

Last synced: 05 Apr 2025

https://github.com/souvikmajumder26/Multi-Agent-Medical-Assistant

⚕️GenAI powered multi-agentic medical diagnostics and healthcare research assistance chatbot. 🏥 Designed for healthcare professionals, researchers and patients.

agent agentic-ai agents chatbot computer-vision disease-detection genai genai-chatbot generative-ai guardrails langchain langgraph large-language-models llm medical-image-processing medical-imaging python rag retrieval-augmented-generation vector-database

Last synced: 02 May 2025

https://github.com/fangq/iso2mesh

Iso2Mesh - a 3D surface and volumetric mesh generator for MATLAB/Octave

computer-graphics image-processing matlab medical-image-processing mesh-generation modeling-tools visualization

Last synced: 16 May 2025

https://github.com/hsokooti/RegNet

Nonrigid image registration using multi-scale 3D convolutional neural networks

convolutional-neural-networks image-registration machine-learning medical-image-processing tensorflow

Last synced: 09 May 2025

https://github.com/CBICA/CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

analytics cancer cancer-imaging-research cbica cpp cpp11 cwl cwltool image-analysis itcr machine-learning medical-image-computing medical-image-processing medical-imaging nci nci-itcr nih radiomics radiomics-features u24

Last synced: 07 May 2025

https://github.com/brianmanderson/dicom_rt_and_images_to_mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

binary-masks deep-learning deeplearning dicom dicom-images dicomrt mask medical-image-processing medical-imaging nifti-images numpy python roi roi-segmentation rt-struct rt-structs rt-utils rtstruct

Last synced: 16 May 2025

https://github.com/viswanath-lab/RadQy

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

imaging machine-learning medical-image-processing medical-imaging medical-physics mri python quality-assurance quality-control quality-metrics

Last synced: 03 May 2025

https://github.com/RivuletStudio/rivuletpy

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

airways arteries centerline curvilinear-coordinates image-processing medical-image-processing medical-imaging morphology neuroinformatics neuron python rivulet2-algorithm tracing

Last synced: 07 May 2025

https://github.com/mic-dkfz/regrcnn

This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.

3d-detection 3d-mask-rcnn 3d-object-detection deep-learning detection lesion-detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing non-maximum-suppression object-detection pytorch-implementation regression-head retinanet roialign

Last synced: 29 Jun 2025

https://github.com/insightsoftwareconsortium/itktubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

image-registration jupyter-notebook medical-image-processing neuroscience python vessel-segmentation

Last synced: 07 Apr 2025

https://github.com/ykuo2/dicom2jpg

A simple Python function tool to convert DICOM files into jpg/png/bmp/tiff files and numpy.ndarray

converter dicom dicom-files dicom-images image image-processing medical-image-processing medical-imaging

Last synced: 27 Mar 2025

https://github.com/eidoslab/unitopatho

Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.2021.9506198

cancer data health histopathological-image histopathology histopathology-images medical-image-processing medical-images neural-networks

Last synced: 12 Aug 2025

https://github.com/ayyucedemirbas/kerasfuse

KerasFuse is a Python library that combines the power of TensorFlow and Keras with various computer vision techniques for medical image analysis tasks. It provides a collection of modules and functions to facilitate the development of deep learning models in TensorFlow Keras for tasks such as image segmentation, classification, and more.

computer-vision deep-learning keras medical-image-processing tensorflow

Last synced: 14 Sep 2025

https://github.com/EIDOSLAB/UNITOPATHO

Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.2021.9506198

cancer data health histopathological-image histopathology histopathology-images medical-image-processing medical-images neural-networks

Last synced: 06 May 2025

https://github.com/adgaudio/ietk-ret

Re-colorize and enhance color fundus images. Image Enhancement Toolkit for Retinal Fundus Images (IETK-Ret).

color color-correction dark-channel-prior dehazing image-enhancement image-processing medical-image-processing pixel-color-amplification retinal-fundus-images

Last synced: 18 Oct 2025

https://github.com/mertyildiran/dermatron

Dermatology focused medical records software, augmented with computer vision and artificial intelligence [Meteor packaged with Electron]

dermatology javascript medical medical-image-processing medical-imaging meteor

Last synced: 23 Apr 2025

https://github.com/mr-talhailyas/tsfd

Nuclei segmentation and classification (Cancer cells)

bifpn cancer-detection deep-learning medical-image-processing nuclei-segmentation

Last synced: 26 Oct 2025

https://github.com/aromanro/nmri

2D Fourier Transform of Nuclear Magnetic Resonance Imaging raw data, 3D visualization with VTK

computational-physics fft fftw medical-image-computing medical-image-processing medical-imaging mfc nmri physics vtk vtk-applications vtk-library

Last synced: 26 Jun 2025

https://github.com/shunk031/chainer-skin-lesion-detector

Skin Lesion Detector using HAM10000 dataset with Chainer / ChainerCV

chainer chainercv medical medical-image-processing skin-lesion skin-lesion-detection

Last synced: 30 Apr 2025

https://github.com/meetps/cs-736

Assignment codes for CS736 Algorithms for Medical Image Processing.

medical-image-processing mri segmentation xray

Last synced: 23 Feb 2025

https://github.com/imagingdatacommons/nnu-net-bpr-annotations

Code accompanying this dataset: Krishnaswamy, D., Bontempi, D., Clunie, D., Aerts, H. & Fedorov, A. AI-derived annotations for the NLST and NSCLC-Radiomics computed tomography imaging collections. (2022). doi:10.5281/zenodo.7473970

colaboratory deep-learning dicom medical-image-processing medical-imaging reproducible-research

Last synced: 12 May 2025

https://github.com/matlab-deep-learning/classification-of-sars-covid-19-and-other-lung-infections-from-chest-x-ray-scan-images-with-densenet

This example shows how to train a deep neural network to classify SARS COVID-19 and other lung infections using chest X-ray (CXR) images.

chest-xray-images computer-vision covid19 deep-learning densenet matlab matlab-deep-learning medical-image-processing

Last synced: 06 Oct 2025

https://github.com/altunenes/butter2d

Butterworth filter for spatial frequencies on images. Includes a WASM demo

butterworth fourier-analysis medical-image-processing psychophysics spatial-frequency vision

Last synced: 15 Jul 2025

https://github.com/smith42/heart-cnn

CNN to diagnose heart disease in SPECT images

cnn machine-learning medical-image-processing

Last synced: 27 Oct 2025

https://github.com/timkong21/polyp-segmentation

Polyp segmentation tool utilizing U-Net for accurate medical image analysis, designed to enhance early detection and diagnosis of colorectal cancer. Features a user-friendly Streamlit web app for easy image processing and analysis, leveraging the Kvasir-SEG dataset for improved healthcare outcomes.

aws-s3 cancer-detection colonoscopy computer-vision data-augmentation data-science deep-learning diagnostics healthcare machine-learning medical-application medical-image-analysis medical-image-processing medical-image-segmentation opencv polyp-segmentation python streamlit tensorflow u-net

Last synced: 14 Apr 2025

https://github.com/souvikmajumder26/multi-agent-medical-assistant

⚕️GenAI-powered multi-agentic medical diagnostics and healthcare research assistance chatbot. 🏥 Designed for healthcare professionals, researchers and patients.

agent agentic-ai agents chatbot computer-vision disease-detection genai genai-chatbot generative-ai guardrails langchain langgraph large-language-models llm medical-image-processing medical-imaging python rag retrieval-augmented-generation vector-database

Last synced: 22 Mar 2025

https://github.com/cyrilzakka/phantom

Effective DICOM anonymization in Python

anonymization dicom medical-image-processing medical-imaging pydicom

Last synced: 05 Oct 2025

https://github.com/daneshjoy/matlab_mip

Codes from my MATLAB Digital Signal Processing course

matlab medical-image-processing

Last synced: 20 Mar 2025

https://github.com/d-f/brain-image-classification

A basic example of image classification with PyTorch, included with instructions on how to re-create results and the performance of the best performing model

brain-tumor-classification cancer-imaging convolutional-neural-networks deep-learning image-classification medical-image-processing mri-images pytorch tumor-detection

Last synced: 07 Apr 2025

https://github.com/fpaskali/lfapp

The repository includes the development version of R package LFApp

calibration image-processing medical-image-processing r r-package rstats shiny

Last synced: 23 Apr 2025

https://github.com/fitushar/automatic_breast_region_extraction_using_python

This Repo will contain Python Implementation of an Automatic approach to Extraction Breast Region from Memogram

breast-region-extraction cv cv2 image-processing medical-image-analysis medical-image-processing medical-image-segmentation python tomography

Last synced: 06 Oct 2025

https://github.com/weixuanchan/medimgproc

MedImgProc is a Medical Image Processing module for viewing and editing.

medical-image-processing

Last synced: 14 Apr 2025

https://github.com/mvanzulli/apolo.jl

An under-construction package for material identification problems

biomechanichs fem inverse-problems material-identification medical-image-processing optimization-algorithms

Last synced: 16 Jun 2025

https://github.com/matteofasulo/hermes

HERMS: Healthcare Ethics & Robustness in Medical Image Systems

adversarial-attacks adversarial-defense ethics-in-ai evasion-attack medical-image-processing

Last synced: 27 Aug 2025

https://github.com/mustafahakkoz/alzheimer-contest

Submission for drivendata 3D-MRI video contest

cnn computer-vision keras medical-image-processing opencv

Last synced: 23 Mar 2025