Projects in Awesome Lists tagged with tomography
A curated list of projects in awesome lists tagged with tomography .
https://github.com/invesalius/invesalius3
3D medical imaging reconstruction software
dicom dicom-viewer magnetic-resonance-imaging medical-image-processing medical-imaging segmentation tomographic-images tomography
Last synced: 16 Jun 2026
https://github.com/cern/tigre
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
cuda gpus image-reconstruction matlab python tigre tomography toolbox x-ray
Last synced: 15 May 2025
https://github.com/odlgroup/odl
Operator Discretization Library https://odl.readthedocs.io/
discretization imaging inverse-problems mathematics optimization prototyping python tomography
Last synced: 17 Nov 2025
https://github.com/pmeal/porespy
A set of tools for characterizing and analyzing 3D images of porous materials
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Last synced: 21 Oct 2025
https://github.com/tomopy/tomopy
Tomographic Reconstruction in Python
python reconstruction tomography toolbox
Last synced: 21 Oct 2025
https://github.com/openchemistry/tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
3d-graphics materials-science open-science open-source opengl python scientific-visualization tomography visualization
Last synced: 04 Apr 2025
https://github.com/PMEAL/porespy
A set of tools for characterizing and analying 3D images of porous materials
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Last synced: 14 Mar 2025
https://github.com/matteo-ronchetti/torch-radon
Computational Tomography in PyTorch
cuda hacktoberfest inverse-problems pytorch radon-transform shearlet-transform tomography
Last synced: 15 Apr 2025
https://github.com/OpenEIT/OpenEIT
Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods
biomedical-image-processing biomedical-instrumentation eit electrical-impedance-tomography image-reconstruction inverse-problems python tomography
Last synced: 15 Mar 2025
https://github.com/sandialabs/pygsti
A python implementation of Gate Set Tomography
characterization gst qcvv quantum-computing scr-2018 snl-quantum-computing tomography
Last synced: 16 May 2025
https://github.com/dkazanc/tomophantom
Software to generate 2D/3D/4D analytical phantoms and their Radon transforms (parallel beam) for image processing
3d-phantoms astra-toolbox computed-tomography deblurring denoising-images image image-classification image-reconstruction machine-learning matlab phantom radon reconstruction tomography
Last synced: 20 Jun 2025
https://github.com/jefffessler/mirt.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
image-reconstruction inverse-problems julia k-space lasso mirt mri nufft optimization-algorithms sinogram sparse-coding tomography
Last synced: 02 Jan 2026
https://github.com/TomographicImaging/CIL
A versatile python framework for tomographic imaging
optimisation python tomography
Last synced: 23 Apr 2025
https://github.com/llnl/leap
comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch
abel-transform artificial-intelligence beamhardening bhc computed-tomography cone-beam ct helical-reconstruction image-reconstruction iterative-reconstruction leap machine-learning medical-imaging metal-artifact-reduction parallel-beam scatter-correction spect tomographic-reconstruction tomography vam
Last synced: 05 Apr 2025
https://github.com/fmagrini/seislib
Seismic imaging at local, regional, and global scale
ambient-noise imaging inversion python seismology surface-waves teleseismic-earthquakes tomography
Last synced: 06 Oct 2025
https://github.com/ToFuProject/tofu
Project for an open-source python library for synthetic diagnostics and tomography for Fusion devices
conda data-visualization diagnostics fusion imas nuclear-fusion open-source physics pip plasma plasma-diagnostics plasma-physics python ray-tracing raytracer science-research synthetic-diagnostics tokamak tomography toolbox
Last synced: 27 Jun 2026
https://github.com/villekf/omega
Open-source multi-dimensional tomographic reconstruction software (OMEGA)
computed-tomography cone-beam-ct cuda emission-tomography gate gpgpu gpu image-reconstruction inverse-problems matlab medical-imaging octave opencl opengate pet python reconstruction tomography
Last synced: 05 Sep 2025
https://github.com/tofuproject/tofu
Project for an open-source python library for synthetic diagnostics and tomography for Fusion devices
conda data-visualization diagnostics fusion imas nuclear-fusion open-source physics pip plasma plasma-diagnostics plasma-physics python ray-tracing raytracer science-research synthetic-diagnostics tokamak tomography toolbox
Last synced: 06 Oct 2025
https://github.com/diamondlightsource/discorpy
Camera calibration with sub-pixel accuracy: https://discorpy.readthedocs.io/
camera-calibration distortion-correction perspective-distortion radial-distortion tomography
Last synced: 05 Apr 2025
https://github.com/algotom/algotom
Data processing algorithms for tomography: https://algotom.readthedocs.io
grid-scanning-tomography half-acquisition-scan helical-scan image-processing image-reconstruction phase-contrast-imaging phase-unwrapping preprocessing-techniques ring-artifact-removal speckle-tracking synchrotron-based-tomography tomography x-ray-imaging
Last synced: 18 Feb 2026
https://github.com/geoscienceaustralia/hiperseis
High Performance Seismologic Data and Metadata Processing System
geophysics inversion seismology tomography
Last synced: 06 Apr 2025
https://github.com/rigetti/forest-benchmarking
A library for quantum characterization, verification, validation (QCVV), and benchmarking using pyQuil.
benchmarking forest qcvv quantum-computing tomography
Last synced: 03 Oct 2025
https://github.com/dkazanc/tomobar
TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software
admm artifacts astra-toolbox cupy fista inverse-problems model-based multigpu reconstruction regularisation regularization tomographic-reconstruction tomography x-ray
Last synced: 20 Jun 2025
https://github.com/odhondt/ndsar
NDSAR speckle filtering for multidimensional and single-channel SAR images
cpp denoising image-filtering image-processing polarimetry python remote-sensing speckle synthetic-aperture-radar tomography
Last synced: 05 Mar 2026
https://github.com/anderbiguri/phdthesis
A.Biguri PhD thesis: Iterative Reconstruction and Motion compensation in Computed Tomography on GPUs
gpu motion-compensation thesis tigre-toolbox tomography
Last synced: 08 Jan 2026
https://github.com/advancedphotonsource/tike
Repository for ptychography software
computational-imaging image-processing ptychography tomography
Last synced: 21 Oct 2025
https://github.com/tomography/tomobank
Tomography data bank for everyone.
database tomography x-ray-physics
Last synced: 19 Feb 2026
https://github.com/groupeLIAMG/bh_tomo
A Matlab borehole radar/seismic tomography package
borehole geophysics tomography traveltime
Last synced: 07 May 2025
https://github.com/cabouman/svmbir
Fast code for parallel or fan beam tomographic reconstruction
computed-tomography fan-beam parallel-beam plug-and-play python python3 reconstruction tomography
Last synced: 22 Feb 2026
https://github.com/cicwi/recast3d
Real-time visualization tool for tomographic data.
opengl tomography visualization
Last synced: 09 Feb 2026
https://github.com/EIT-team/ScouseTom
Open Source EIT system using Keithley 6221 current source and EEG systems
arduino biomedical-instrumentation brain-imaging eeg eit electrical-impedance-tomography hardware scousetom tomography
Last synced: 15 Mar 2025
https://github.com/kylechampley/xrayphysics
C/C++ library and Python bindings for x-ray cross sections, x-ray source spectra modeling, multi-material beam hardening correction, and dual energy decomposition algorithms
beamhardening bremsstrahlung computed-tomography cross-sections dect leap spectra tomography x-ray-physics x-ray-simulation
Last synced: 16 Aug 2025
https://github.com/thomaslecocq/msnoise-tomo
The Ambient Noise Tomography Plugin for MSNoise
imaging noise passive python research seismic seismology signal-processing tomography volcanology
Last synced: 12 Apr 2025
https://github.com/ThomasLecocq/msnoise-tomo
The Ambient Noise Tomography Plugin for MSNoise
imaging noise passive python research seismic seismology signal-processing tomography volcanology
Last synced: 06 Oct 2025
https://github.com/csheaff/filt-back-proj
Filtered backprojection in python without explicit use of Radon transform functions
Last synced: 25 Jul 2026
https://github.com/roflmaostc/radonka.jl
A simple yet sufficiently fast (attenuated) Radon and backproject implementation using KernelAbstractions.jl. Runs on CPU, CUDA, ...
automatic-differentiation computed-tomography ct cuda gpu julia julia-language optimization radon radon-transform tomography x-ray
Last synced: 22 Jul 2025
https://github.com/jtschwar/tomo_tv
C++ library for Regularized 2D and 3D Tomography Reconstructions.
3d-reconstruction cuda inverse-problems regularization tomography
Last synced: 25 Apr 2025
https://github.com/usnistgov/etspy
A Hyperspy extension package for processing and reconstructing electron tomography data
electron-microscopy tomography
Last synced: 08 Apr 2026
https://github.com/csheaff/pa-tomography-xu-wang
Photoacoustic tomography as proposed by Xu and Wang in Python and Rust.
acoustics optoacoustics photoacoustics tomography ultrasound
Last synced: 25 Jul 2026
https://github.com/zehao99/CEIT
Python Package for EIT(Electric Impedance Tomography)-like problems using Gauss-Newton method.
calculation eit fem inverse-problems realtime-solver tomography
Last synced: 15 Mar 2025
https://github.com/pytomography/spectpsftoolbox
Toolbox for obtaining PSF models of gamma cameras so they can be used in SPECT reconstruction
psf reconstruction spect tomography
Last synced: 06 Oct 2025
https://github.com/nicolasbizzozzero/nonogram
A nonogram/picross/griddler solver written in Python 3
griddler nonogram picross research-project solver tomography upmc
Last synced: 04 Mar 2026
https://github.com/juliaimagerecon/spectrecon.jl
Julia code for SPECT image reconstruction
julia-language spect tomography
Last synced: 14 Aug 2025
https://github.com/magis-slac/gradoptics
differentiable machine-learning optics-simulation pytorch ray-tracing simulator tomography
Last synced: 19 Apr 2025
https://github.com/hanjinliu/cylindra
Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
gui microtubule python tomography
Last synced: 19 Oct 2025
https://github.com/olivierverdier/diffeopt
Optimisation on Diffeomorphisms
diffeomorphism mathematics prototyping python registration tomography
Last synced: 14 May 2025
https://github.com/schipp/eikonal_tomography
Synthetic demonstration of Eikonal tomography
eikonal seismic-ambient-noise seismic-imaging seismic-tomography seismology tomography
Last synced: 10 Apr 2025
https://github.com/openchemistry/materialsdatabank
An information portal for 3D atomic electron tomography data
data-management material-science openscience tomography
Last synced: 25 Apr 2025
https://github.com/cicwi/plenoptomos
Plenoptic imaging reconstruction tools
computational-photography light-field optimization plenoptic reconstruction tomography
Last synced: 09 Feb 2026
https://github.com/maximelagrange/muograph
Muon tomography data analysis library
image muon reconstruction-algorithm tomography
Last synced: 15 Oct 2025
https://github.com/kylechampley/leapct-ui-gui
high level UI and GUI for the LEAP-CT library
computed-tomography leap tomographic-reconstruction tomography
Last synced: 16 Aug 2025
https://github.com/llnl/pysaber
Python package for a systems approach to blur estimation and reduction
blur-model blur-psfs deblur deblur-radiograph detector-blur psf python radiography source-blur tomography x-ray xray-source
Last synced: 29 Oct 2025
https://github.com/jewettaij/visfd
volumetric image toolkit for simple feature detection in 3D images (segment tomograms)
3d-images cryo-em cryoem electron-microscopy image-processing membrane-detection mrc-format segmentation tensor-voting tomography
Last synced: 18 Jan 2026
https://github.com/diamondlightsource/httomo
High-throughput tomography pipeline
data data-analysis gpu gpu-acceleration high-performance imaging mpi tomography tomopy
Last synced: 02 Mar 2025
https://github.com/cherenkov-plenoscope/ray_voxel_overlap
Estimating system-matrices for tomography
medicine ray science system-matrix tomography voxels x-ray
Last synced: 16 Jan 2026
https://github.com/hemmelig/fmtomo-tools
A collection of complementary scripts and notebooks for FMTomo
anisotropy hacktoberfest research seismic seismology tomography
Last synced: 17 Jun 2025
https://github.com/zhiqwang/huo
🔥 日出江花红胜火，春来江水绿如蓝
algebraic-reconstruction-technique art pytorch reconstruction tomography
Last synced: 13 Aug 2025
https://github.com/juliaimagerecon/examples
Image reconstruction examples using the Julia language
image-reconstruction julia-language tomography
Last synced: 17 Aug 2025
https://github.com/gianthk/alrecon
Tomography reconstruction Web App that keeps non-expert users in mind
ct-reconstruction graphical-user-interface image-processing solara tomography
Last synced: 06 Mar 2026
https://github.com/jmbhughes/solartom
Python solar tomography package with Rust backend
computer-vision solar tomography
Last synced: 26 Sep 2025
https://github.com/diamondlightsource/httomolibgpu
A library of GPU-enabled data processing and reconstruction methods for tomography
cupy data-science filters gpu-acceleration image-processing tomography
Last synced: 02 Mar 2025
https://github.com/ohgreat/dart_python
DART (Discrete Algebric Reconstruction Technique) iterative reconstruction algorithm for discrete tomography.
image-reconstruction python tomography tomography-simulation
Last synced: 02 Apr 2026
https://github.com/fitushar/automatic_breast_region_extraction_using_python
This Repo will contain Python Implementation of an Automatic approach to Extraction Breast Region from Memogram
breast-region-extraction cv cv2 image-processing medical-image-analysis medical-image-processing medical-image-segmentation python tomography
Last synced: 01 May 2026
https://github.com/olivierverdier/odlpet
Bindings for positron emission tomography
emission-tomography imaging inverse-problems mathematics odl prototyping python tomography
Last synced: 14 May 2025
https://github.com/albertocuadra/inverse_problems
A collection of inverse problems (e.g., reconstruction of databases, algebraic reconstruction, topological derivatives, gravitational prospecting)
algebraic-reconstruction-algorithms algebraic-reconstruction-technique gravitational-prospecting heat-equation inverse-problems matlab reconstruction-algorithm svd tomography topological-derivatives tsvd
Last synced: 26 May 2026
https://github.com/shicks-seismo/simul2000_utilities
Various utilities for the simul2000 local earthquake tomography program
earthquakes geophysics seismology tomography
Last synced: 07 Jun 2026
https://github.com/benweare/em_scripts
Electron microscopy scripts not associated with any specific publications.
contrast-transfer-function ctf data-analysis digital-micrograph electron-microscopy jupyter-notebook optics python tomography tomography-data-collection transmission-electron-microscopy zemlin-tableau zernike-polynomials
Last synced: 07 Apr 2026
https://github.com/alleninstitute/atexplorer
API's and Applications for ArrayTomography (AT)
Last synced: 10 Feb 2026
https://github.com/haydengunraj/optical_tomography
A rough attempt at optical tomography using an iPhone camera and lamp
Last synced: 23 Mar 2025
https://github.com/adriacabeza/discretetomography
Path Puzzles: Discrete Tomography with Prolog
logic-programming prolog puzzle-solving-game puzzles tomography
Last synced: 02 Mar 2026
https://github.com/aonurakman/stroke-detection-n-segmentation
Detection, classification and segmentation of stroke regions from brain tomography images. - Bachelor's Thesis - 2021 - Yildiz Technical University
computer-vision densenet inception mask-rcnn medical mobilenet python stroke tomography transfer-learning u-net vgg16 yolov3
Last synced: 13 Apr 2026
https://github.com/adtzlr/fiberreinforcedrubber
Numeric simulation for a test specimen with a fiber-reinforced rubber composite
cord-rubber-composite damage-mechanisms delamination fatigue-testing finite-elements-analysis tomography
Last synced: 08 May 2026
https://github.com/tomography/holotomocupy
X-ray holo-tomography reconstruction code
Last synced: 19 Feb 2026
https://github.com/dkazanc/larix
Larix - a collection of image processing tools
filtering inpainting morphological-processing segmentation tomography
Last synced: 20 Jun 2025
https://github.com/peter-t-ruehr/checkpoint_converter
Converts any image stack to a Stratovan Checkpoint file (*.ckpt) keeping specimen names and voxel sizes.
biology botany checkpoint geometric-morphometrics image-stacks imagej imagej-macro micro-ct mri r tomography zoology
Last synced: 01 Jul 2025
https://github.com/peter-t-ruehr/adaptive_decoupling_insects
Code used to analyze adaptive decoupling in insects.
3d biology dermaptera earwigs ecology entomology evolution evolutionary-ecology geometric-morphometrics insects metamorphosis micro-ct plecoptera stoneflies tomography zoology
Last synced: 02 Mar 2025
https://github.com/haldih/tat
A tool for 2D tomographic images clustering
clustering pyside6 python qt6 tomography
Last synced: 18 Feb 2026
https://github.com/peter-t-ruehr/ckpt2r
Imports Stratovan Checkpoint files (*.ckpt) directly into R.
biology botany checkpoint evolution geometric-morphometrics landmarks microct r shape tomography zoology
Last synced: 27 Jun 2025
https://github.com/a1rb4ck/tomo
Tomography using Tomopy. Visualizations using VisPy
Last synced: 17 Mar 2025
https://github.com/denysdovhan/voxel-viewer
Web-based viewer for CBCT (Cone Beam Computed Tomography) volumes and scan folders (supports Sirona GALILEOS, DICOM, OneVolume)
cbct cbct-images computer-tomograpy cone-beam cone-beam-ct dental dental-scanning dental-software dicom dicom-files dicom-images dicom-viewer galileos onevolume sirona-galileos threejs threejs-learning tomography voxel-engine voxels
Last synced: 16 Jun 2026
https://github.com/HaldiH/tat
A tool for 2D tomographic images clustering
clustering pyside6 python qt6 tomography
Last synced: 14 Oct 2025
https://github.com/lruizap/tomography-with-algebraic-topology
This project aims to analyze images using algebraic topology. The goal is to extract structural information from images through mathematical concepts such as connected components and loops.
gudhi jupyter-notebook matplotlib numpy opencv python tomography
Last synced: 05 May 2026
https://github.com/peter-t-ruehr/stack_cropping
ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.
biology conversion cropping-images fiji histology image-macro image-stacks imagej material-science micro-ct mri tomography
Last synced: 21 Aug 2025