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Projects in Awesome Lists tagged with medical-image-analysis
A curated list of projects in awesome lists tagged with medical-image-analysis .
https://github.com/fepegar/torchio
Medical imaging toolkit for deep learning
augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch
Last synced: 17 Dec 2024
https://github.com/niftk/niftynet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow
Last synced: 25 Sep 2024
https://github.com/NifTK/NiftyNet
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow
Last synced: 25 Nov 2024
https://github.com/mic-dkfz/medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Last synced: 19 Dec 2024
https://github.com/MIC-DKFZ/medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net
Last synced: 15 Nov 2024
https://github.com/medmnist/medmnist
[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification
2d 3d automl benchmark classification dataset decathlon deep-learning federated-learning few-shot-learning machine-learning medical medical-image-analysis medical-image-computing medical-imaging medmnist mnist multi-modal pytorch
Last synced: 18 Dec 2024
https://github.com/suyashkumar/dicom
⚡High Performance DICOM Medical Image Parser in Go.
dcm dicom dicom-files dicom-images go golang golang-library golang-package imaging medical medical-image-analysis medical-imaging pacs parser real-time streaming
Last synced: 17 Dec 2024
https://github.com/mlmed/torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
chest-radiographs chest-xray chest-xray-images cxr cxr-images dataset deep-learning foundation-models image-classification machine-learning medical medical-ai medical-application medical-image-analysis medical-image-processing medical-imaging pytorch torchxrayvision transfer-learning
Last synced: 15 Nov 2024
https://github.com/nyukat/breast_cancer_classifier
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
breast-cancer breast-cancer-diagnosis classification deep-learning medical-image-analysis medical-imaging neural-network pretrained-models pytorch tensorflow
Last synced: 20 Nov 2024
https://github.com/jeya-maria-jose/Medical-Transformer
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
attention deep-learning medical-image-analysis medical-imaging pytorch segmentation transformer transformers
Last synced: 15 Nov 2024
https://github.com/BMIRDS/deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
cancer histopathology-images lung medical-image-analysis microscopy pathology-image resnet sliding-windows wsi
Last synced: 14 Nov 2024
https://github.com/pykale/pykale
Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!
computer-vision data-science deep-learning domain-adaptation graph-analysis knowledge-aware-learning machine-learning medical-image-analysis meta-learning multimodal multimodal-learning python pytorch transfer-learning
Last synced: 20 Dec 2024
https://github.com/frankkramer-lab/MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
clinical-decision-support computer-vision convolutional-neural-networks deep-learning framework healthcare-imaging medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging neural-network pip segmentation tensorflow
Last synced: 15 Nov 2024
https://github.com/TissueImageAnalytics/tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
cell-classification cell-segmentation computational-pathology deep-learning digital-pathology histopathology image-analysis machine-learning medical-image-analysis python stain-normalization tissue-analysis tissue-segmentation whole-slide-imaging
Last synced: 13 Nov 2024
https://github.com/huanglizi/lvit
[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
medical-image-analysis multimodal-learning pytorch segmentation vision-language
Last synced: 17 Dec 2024
https://github.com/HUANGLIZI/LViT
[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
medical-image-analysis multimodal-learning pytorch segmentation vision-language
Last synced: 28 Nov 2024
https://github.com/natandrade/Tutorial-Medical-Image-Registration
Medical Image Registration
medical-image-analysis medical-image-processing medical-image-registration medical-imaging tutorial-medical-image-registration
Last synced: 09 Nov 2024
https://github.com/fitushar/3d-medical-imaging-preprocessing-all-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
3d 3d-padding 3d-preproceing abdomen-ct crop ct-preprocessing medical-image-analysis medical-image-processing medical-imaging mri-preprocessing normalization pre-processing python registration resampling simpleitk
Last synced: 19 Dec 2024
https://github.com/fitushar/3D-Medical-Imaging-Preprocessing-All-you-need
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
3d 3d-padding 3d-preproceing abdomen-ct crop ct-preprocessing medical-image-analysis medical-image-processing medical-imaging mri-preprocessing normalization pre-processing python registration resampling simpleitk
Last synced: 15 Nov 2024
https://github.com/koriavinash1/deepbrainseg
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
artificial-intelligence biomedical-image-analysis brain-segmentation brain-tumor brain-tumor-segmentation brats deep-convolutional-neural-networks deep-learning ensemble-learning medical-image-analysis segmentation
Last synced: 15 Dec 2024
https://github.com/mlcommons/gandlf
A generalizable application framework for segmentation, regression, and classification using PyTorch
biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation
Last synced: 18 Dec 2024
https://github.com/mlcommons/GaNDLF
A generalizable application framework for segmentation, regression, and classification using PyTorch
biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation
Last synced: 15 Nov 2024
https://github.com/mkang315/BGF-YOLO
[MICCAI'24] Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".
afpn bi-level-routing-attention biformer bifpn br35h-brain-tumor-detection-2020 cbam ciou-loss computer-vision-algorithms deep-learning-framework deep-neural-networks gfpn giou-loss lesion-detection medical-image-analysis medical-image-computing medical-image-detection medical-image-processing object-detection wiou-loss yolo
Last synced: 15 Dec 2024
https://github.com/mrgiovanni/touchstone
[NeurIPS 2024] Touchstone - Benchmarking AI on 5,172 o.o.d. CT volumes and 9 anatomical structures
benchmark medical-image-analysis segmentation
Last synced: 18 Dec 2024
https://github.com/mkang315/RCS-YOLO
[MICCAI'23] Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".
br35h-brain-tumor-detection-2020 brain-tumor-detection computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis medical-image-computing medical-image-dataset medical-image-detection medical-image-processing object-detection panet reparameterization repconv-model repvgg-model shufflenet vovnet yolo
Last synced: 28 Oct 2024
https://github.com/haranrk/digipathai
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
cancer-research deep-learning gui medical-image-analysis openslide python segmentation wsi
Last synced: 19 Dec 2024
https://github.com/haranrk/DigiPathAI
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
cancer-research deep-learning gui medical-image-analysis openslide python segmentation wsi
Last synced: 13 Nov 2024
https://github.com/rundherum/pymia
pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis
dataloader deep-learning machine-learning medical-image-analysis metrics python-library
Last synced: 15 Nov 2024
https://github.com/ad12/dosma
An AI-powered open-source medical image analysis toolbox
deep-learning medical-image-analysis mri musculoskeletal
Last synced: 21 Dec 2024
https://github.com/jordicorbilla/ocular-disease-intelligent-recognition-deep-learning
ODIR-2019. Ocular Disease Intelligent Recognition Through Deep Learning Architectures
computer-vision convolutional-neural-networks deep-learning deep-neural-networks fundus-image-analysis image-classification keras-tensorflow machine-learning medical-image-analysis python python3 tensorflow
Last synced: 06 Nov 2024
https://github.com/koriavinash1/optic-disk-cup-segmentation
Optic Disc and Optic Cup Segmentation using 57 layered deep convolutional neural network
ai artificial-intelligence cdr-prediction deep-convolutional-neural-networks deep-learning fundus-image-analysis glaucoma-detection medical-image-analysis opticdisk-segmentation segmentation
Last synced: 09 Nov 2024
https://github.com/mkang315/CST-YOLO
[ICIP'24 Lecture Presentation] Official implementation of "CST-YOLO: A Novel Method for Blood Cell Detection Based on Improved YOLOv7 and CNN-Swin Transformer".
blood-cell-counting-dataset blood-cell-detection blood-cell-detection-dataset complete-bloodcell-count computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis medical-image-computing medical-image-detection medical-image-processing multiscale object-detection shufflenet small-object-detection swin-transformer transformer yolo yolov7
Last synced: 09 Nov 2024
https://github.com/ZzzjzzZ/ETNet
ET-Net: A Generic Edge-aTtention Guidance Network for Medical Image Segmentation
medical-image-analysis semantic-segmentation
Last synced: 31 Oct 2024
https://github.com/aehrc/cvt2distilgpt2
Improving Chest X-Ray Report Generation by Leveraging Warm-Starting
chest-xray-imaging distilgpt2 gpt-2 huggingface-transformers image-captioning medical-image-analysis mimic-cxr multimodal multimodal-deep-learning pytorch pytorch-lightning vision-transformer
Last synced: 25 Nov 2024
https://github.com/keiserlab/plaquebox-paper
Repo for Tang et al, bioRxiv 454793 (2018)
alzheimers-disease amlyoid-plaques convolutional-neural-networks deep-learning dementia explainable-ai immunohistochemical-images interpretable-machine-learning machine-learning medical-image-analysis pathology plaques saliency-map
Last synced: 18 Nov 2024
https://github.com/nupurbhaisare/cup-and-disc-segmentation-for-glaucoma-detection-cdr-calculation-
An adaptive threshold based algorithm for optic disc and cup segmentation in fundus images
adaptive-thresholding ai cdr cdr-calculation cup-segmentation-methods fundus-image-analysis glaucoma-detection ipynb medical-image-analysis medical-image-processing optic-cup optic-cup-disc-segmentation optic-disc python
Last synced: 11 Oct 2024
https://github.com/fk128/sarcopenia-ai
Code for paper Kanavati, F. et al. (2020). Fully-automated deep learning slice-based muscle estimation from CT images for sarcopenia assessment. arXiv preprint arXiv:2006.06432.
ct-slice-detection deep-learning medical-image-analysis muscle-estimation sarcopenia-assessment
Last synced: 18 Dec 2024
https://github.com/sadmansakib93/stratified-k-fold-cross-validation-image-classification-keras
This python program demonstrates image classification with stratified k-fold cross validation technique.
cnn-keras convolutional-neural-networks cross-validation deep-learning image-classification keras-neural-networks machine-learning medical-image-analysis medical-image-processing stratified-cross-validation
Last synced: 12 Nov 2024
https://github.com/adgaudio/o-medal
O-MedAL: Online Active Deep Learning for Medical Image Analysis. This repo contains code for the paper.
active-learning deep-learning diabetic-retinopathy-detection machine-learning medical-image-analysis online-learning
Last synced: 20 Dec 2024
https://github.com/pramod-zillella/brain-tumor-segmentation
Fully automatic brain tumor segmentation using the Modified 3DUNet architecture for Brats 2020 Challenge.
biomedical-image-analysis brain-tumor-segmentation brats-challenge deep-learning medical-image-analysis unet-3d
Last synced: 09 Dec 2024
https://github.com/koriavinash1/fetal-brain-segmentation
Fully automatic technique for fetal brain segmentation using deep convolutional neural network
ai artificial-intelligence automatic-segmentation deep-convolutional-neural-networks deep-learning fetal-imaging fmri-analysis medical-image-analysis segmentation unet-image-segmentation
Last synced: 09 Nov 2024
https://github.com/zylbuaa/TFormer
The official implementation of "TFormer: A throughout fusion transformer for multi-modal skin lesion diagnosis"
medical-image-analysis multi-modal-fusion skin-lesion-classification transformer
Last synced: 05 Nov 2024
https://github.com/faust-prime/X-ray-images-classification-with-Keras-TensorFlow
ConvNet (CNN) implementation to classify x-ray medical images
augmentation cnn cnn-for-visual-recognition cnn-keras cnn-tensorflow computer-vision keras-implementations keras-layer keras-neural-networks medical medical-image-analysis medical-image-processing tensorflow tensorflow-examples
Last synced: 15 Nov 2024
https://github.com/jaketae/vit-breast-cancer
Transfer learning pretrained vision transformers for breast histopathology
attention-visualization image-classification medical-ai medical-image-analysis pytorch pytorch-implementation self-attention transformer transformers vision-transformer
Last synced: 30 Nov 2024
https://github.com/huanglizi/tfcns
This repository includes the official project of TFCNs, presented in our paper: TFCNs: A CNN-Transformer Hybrid Network for Medical Image Segmentation (ICANN 2022 Oral)
cnn medical-image-analysis pytorch transformer
Last synced: 20 Nov 2024
https://github.com/bring-shrubbery/st-andrews-dissertation
Code for my MSc Artificial Intelligence dissertation at the University of St Andrews
cnn-keras computed-tomography deep-learning medical-image-analysis medical-imaging
Last synced: 18 Dec 2024
https://github.com/Torpedo2648/PCLMix
[ICIC 2024] Official Pytorch Implementation for "PCLMix: Weakly Supervised Medical Image Segmentation via Pixel-Level Contrastive Learning and Dynamic Mix Augmentation"
computer-vision medical-image-analysis
Last synced: 13 Nov 2024
https://github.com/laminetourelab/ai-for-medicine-specialization
Medical Images processing
ai-for-medicine ai-for-medicine-coursera cnn coursera deep-learning densenet121 diagnosis image image-classification image-manipulation image-processing image-segmentation medical-image-analysis mit-license prognosis transfer-learning treatment u-net
Last synced: 08 Nov 2024
https://github.com/sadmansakib93/medical_image_classification_keras
This is an example of medical image classification (binary classification) using Keras. Note that, the model is not fully optimized in this program, and hence it can be further optimized and the accuracy of the model can be enhanced further.
convolutional-neural-networks deep-learning deep-neural-networks image-classification keras keras-neural-networks machine-learning medical-image-analysis
Last synced: 12 Nov 2024
https://github.com/IBM/MAX-Nucleus-Segmenter
Identify nuclei in a microscopy image and assign each pixel of the image to a particular nucleus
deep-learning docker-image machine-learning machine-learning-models medical-image-analysis object-detection tensorflow
Last synced: 18 Nov 2024
https://github.com/rakibhhridoy/ctscanpredictioncovid19-tensorflow
Classifying covid positive and negative cases in ct-scan images. Though the data is not large enough, it can be processed and make prediction from the model. Images are quite similar thus the task became much complicated.
computer-vision covid-19 ctscan deep-learning deep-neural-networks image-classification image-processing keras machine-learning medical-image-analysis neural-network prognosis python
Last synced: 06 Nov 2024
https://github.com/fitushar/automatic_breast_region_extraction_using_python
This Repo will contain Python Implementation of an Automatic approach to Extraction Breast Region from Memogram
breast-region-extraction cv cv2 image-processing medical-image-analysis medical-image-processing medical-image-segmentation python tomography
Last synced: 08 Nov 2024
https://github.com/jingew/dermoscopic-image-icl-gpt4
Dermoscopic Image In-Context Learning (ICL) with GPT4v
dermatology dermoscopic-image gpt-4 in-context-learning llms medical-image-analysis pathology prompt-engineering
Last synced: 12 Dec 2024
https://github.com/muhammadsanaullah/Brain-Tumor-Detection-from-MRI-Scans
Detection and Extraction of any possibly present tumors in the human brain by processing and analyzing MRI Scans.
matlab medical-image-analysis medical-imaging mri-images
Last synced: 15 Nov 2024
https://github.com/reshalfahsi/contrastive-ssl-pathology
Self-Supervised Contrastive Learning for Colon Pathology Classification
biomedical-engineering biomedical-image-processing contrastive-learning image-classification medical-image-analysis pathology-image self-supervised-learning
Last synced: 15 Nov 2024
https://github.com/andreped/ohif4hf
🤗 Showcasing AI solutions for medical applications in OHIF using Hugging Face
ai artificial-intelligence huggingface machine-learning medical-image-analysis ohif open-source pathology plugins radiology web-application
Last synced: 07 Nov 2024
https://github.com/hollobit/medical3dp-sw-evaluation
Standard Phantom for Medical 3D printing modeling software evaluation
3d 3d-modelling 3d-printing 3d-reconstruction ct-images ct-scan-images medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging
Last synced: 16 Nov 2024
https://github.com/dyollb/segmantic
Semantic segmentation and image-to-image translation based on AI
image-processing image-segmentation machine-learning medical-image-analysis monai pytorch simpleitk
Last synced: 15 Oct 2024
https://github.com/fk128/midatasets
python library to interact with NIfTI medical images locally or on s3
dataset medical-image-analysis
Last synced: 18 Dec 2024
https://github.com/ksmooi/mscs_dl_cnn_covid19_xray
This project aims to classify COVID-19 from X-ray images using Convolutional Neural Networks (CNN), leveraging a dataset of normal and pneumonia-affected lungs to assist in early diagnosis through radiological imaging.
cnn deep-learning medical-image-analysis python pytorch
Last synced: 14 Dec 2024
https://github.com/seanxuu/miccai-stats
medical medical-application medical-image-analysis miccai paper
Last synced: 13 Nov 2024
https://github.com/neuro-ml/low-resolution
Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"
deep-learning lung-cancer-detection medical-image-analysis medical-image-segmentation medical-imaging metastases
Last synced: 10 Nov 2024
https://github.com/tg1482/mri-brain-tumor-detection
Repo containing code for EfficientNet3D implementation of 3D-CNN for brain tumor detection for Kaggle competition hosted in the summer of 2021
ai cnn deep-learning medical-image-analysis video-classification
Last synced: 12 Nov 2024
https://github.com/srlozano/ct-reconstruction
Computed Tomography Image Reconstruction task solved at Universitat de Barcelona and Universitat Politècnica de Catalunya · BarcelonaTech
computed-tomography medical-image-analysis python reconstruction skimage
Last synced: 30 Nov 2024
https://github.com/timkong21/polyp-segmentation
Polyp segmentation tool utilizing U-Net for accurate medical image analysis, designed to enhance early detection and diagnosis of colorectal cancer. Features a user-friendly Streamlit web app for easy image processing and analysis, leveraging the Kvasir-SEG dataset for improved healthcare outcomes.
aws-s3 cancer-detection colonoscopy computer-vision data-augmentation data-science deep-learning diagnostics healthcare machine-learning medical-application medical-image-analysis medical-image-processing medical-image-segmentation opencv polyp-segmentation python streamlit tensorflow u-net
Last synced: 12 Dec 2024
https://github.com/petteriteikari/minivess_mlops
Charissa Poon, Petteri Teikari et al. (2023): "A dataset of rodent cerebrovasculature from in vivo multiphoton fluorescence microscopy imaging", Scientific Data 10, 141 doi: 10.1038/s41597-023-02048-8
image-segmentation medical-image-analysis microscopy mlops multiphoton-microscopy segmentation
Last synced: 12 Nov 2024
https://github.com/sabaudian/information_retrieval_project
Content-Based Medical Image Retrieval System - IR project
cbir computer-vision cosine-similarity covid-19 information-retrieval jupyter-notebook keras medical-image-analysis medical-imaging mobilenet pycharm pycharm-ide python resnet-50 unimi vgg16
Last synced: 19 Dec 2024
https://github.com/srlozano/brain-tumor-radiogenomic-classification
Brain Tumor Radiogenomic Classification task solved by Transfer Learning at Universitat de Barcelona and Universitat Politècnica de Catalunya · BarcelonaTech
brain-tumor-classification convolutional-neural-networks deep-learning keras medical-image-analysis python tensorflow transfer-learning
Last synced: 30 Nov 2024