Ecosyste.ms: Awesome

https://github.com/fepegar/torchio

Medical imaging toolkit for deep learning

augmentation data-augmentation deep-learning machine-learning medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging-datasets medical-imaging-with-deep-learning python pytorch

Last synced: 30 Sep 2024

https://github.com/NifTK/NiftyNet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow

Last synced: 06 Aug 2024

https://github.com/niftk/niftynet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

autoencoder convolutional-neural-networks deep-learning deep-neural-networks distributed gan image-guided-therapy medical-image-analysis medical-image-computing medical-image-processing medical-images medical-imaging ml neural-network pip python python2 python3 segmentation tensorflow

Last synced: 25 Sep 2024

https://github.com/MIC-DKFZ/medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net

Last synced: 03 Aug 2024

https://github.com/mic-dkfz/medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

3d-mask-rcnn 3d-models 3d-object-detection deep-learning deep-neural-networks detection mask-rcnn medical-image-analysis medical-image-computing medical-image-processing medical-imaging object-detection pytorch-cnn pytorch-deeplearning pytorch-implementation retina-net retina-unet segmentation semantic-segmentation u-net

Last synced: 01 Oct 2024

https://github.com/medmnist/medmnist

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

2d 3d automl benchmark classification dataset decathlon deep-learning federated-learning few-shot-learning machine-learning medical medical-image-analysis medical-image-computing medical-imaging medmnist mnist multi-modal pytorch

Last synced: 30 Sep 2024

https://github.com/suyashkumar/dicom

⚡High Performance DICOM Medical Image Parser in Go.

dcm dicom dicom-files dicom-images go golang golang-library golang-package imaging medical medical-image-analysis medical-imaging pacs parser real-time streaming

Last synced: 03 Oct 2024

https://github.com/mlmed/torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

chest-radiographs chest-xray chest-xray-images cxr cxr-images dataset deep-learning foundation-models image-classification machine-learning medical medical-ai medical-application medical-image-analysis medical-image-processing medical-imaging pytorch torchxrayvision transfer-learning

Last synced: 03 Aug 2024

https://github.com/nyukat/breast_cancer_classifier

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

breast-cancer breast-cancer-diagnosis classification deep-learning medical-image-analysis medical-imaging neural-network pretrained-models pytorch tensorflow

Last synced: 04 Aug 2024

https://github.com/jeya-maria-jose/Medical-Transformer

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

attention deep-learning medical-image-analysis medical-imaging pytorch segmentation transformer transformers

Last synced: 03 Aug 2024

https://github.com/BMIRDS/deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

cancer histopathology-images lung medical-image-analysis microscopy pathology-image resnet sliding-windows wsi

Last synced: 03 Aug 2024

https://github.com/pykale/pykale

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

computer-vision data-science deep-learning domain-adaptation graph-analysis knowledge-aware-learning machine-learning medical-image-analysis meta-learning multimodal multimodal-learning python pytorch transfer-learning

Last synced: 27 Sep 2024

https://github.com/frankkramer-lab/MIScnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

clinical-decision-support computer-vision convolutional-neural-networks deep-learning framework healthcare-imaging medical-image-analysis medical-image-processing medical-image-segmentation medical-imaging neural-network pip segmentation tensorflow

Last synced: 03 Aug 2024

https://github.com/TissueImageAnalytics/tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

cell-classification cell-segmentation computational-pathology deep-learning digital-pathology histopathology image-analysis machine-learning medical-image-analysis python stain-normalization tissue-analysis tissue-segmentation whole-slide-imaging

Last synced: 02 Aug 2024

https://github.com/HUANGLIZI/LViT

[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"

medical-image-analysis multimodal-learning pytorch segmentation vision-language

Last synced: 08 Aug 2024

https://github.com/natandrade/Tutorial-Medical-Image-Registration

Medical Image Registration

medical-image-analysis medical-image-processing medical-image-registration medical-imaging tutorial-medical-image-registration

Last synced: 02 Aug 2024

https://github.com/koriavinash1/deepbrainseg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

artificial-intelligence biomedical-image-analysis brain-segmentation brain-tumor brain-tumor-segmentation brats deep-convolutional-neural-networks deep-learning ensemble-learning medical-image-analysis segmentation

Last synced: 03 Oct 2024

https://github.com/fitushar/3D-Medical-Imaging-Preprocessing-All-you-need

This Repo Will contain the Preprocessing Code for 3D Medical Imaging

3d 3d-padding 3d-preproceing abdomen-ct crop ct-preprocessing medical-image-analysis medical-image-processing medical-imaging mri-preprocessing normalization pre-processing python registration resampling simpleitk

Last synced: 03 Aug 2024

https://github.com/mlcommons/GaNDLF

A generalizable application framework for segmentation, regression, and classification using PyTorch

biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation

Last synced: 03 Aug 2024

https://github.com/mlcommons/gandlf

A generalizable application framework for segmentation, regression, and classification using PyTorch

biomedical-image-processing classification clinical-workflow data-augmentation deep-learning framework machine-learning medical-image-analysis medical-imaging medical-informatics pytorch regression segmentation

Last synced: 29 Sep 2024

https://github.com/shawnyuen/gans_paper_collection

cgans deep-learning gans generative-adversarial-network keras medical-image-analysis medical-imaging pytorch tensorflow tensorlayer theano torch

Last synced: 01 Aug 2024

https://github.com/mkang315/BGF-YOLO

[MICCAI'24] Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".

afpn bi-level-routing-attention biformer bifpn br35h-brain-tumor-detection-2020 cbam ciou-loss computer-vision-algorithms deep-learning-framework deep-neural-networks gfpn giou-loss lesion-detection medical-image-analysis medical-image-computing medical-image-detection medical-image-processing object-detection wiou-loss yolo

Last synced: 22 Aug 2024

https://github.com/haranrk/DigiPathAI

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

cancer-research deep-learning gui medical-image-analysis openslide python segmentation wsi

Last synced: 02 Aug 2024

https://github.com/mkang315/RCS-YOLO

[MICCAI'23] Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".

br35h-brain-tumor-detection-2020 brain-tumor-detection computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis medical-image-computing medical-image-dataset medical-image-detection medical-image-processing object-detection panet reparameterization repconv-model repvgg-model shufflenet vovnet yolo

Last synced: 31 Jul 2024

https://github.com/rundherum/pymia

pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis

dataloader deep-learning machine-learning medical-image-analysis metrics python-library

Last synced: 03 Aug 2024

https://github.com/ZzzjzzZ/ETNet

ET-Net: A Generic Edge-aTtention Guidance Network for Medical Image Segmentation

medical-image-analysis semantic-segmentation

Last synced: 31 Jul 2024

https://github.com/mkang315/CST-YOLO

[ICIP'24 Oral Presentation] Official implementation of "CST-YOLO: A Novel Method for Blood Cell Detection Based on Improved YOLOv7 and CNN-Swin Transformer".

blood-cell-counting-dataset blood-cell-detection blood-cell-detection-dataset complete-bloodcell-count computer-vision convolutional-neural-networks deep-learning deep-neural-networks medical-image-analysis medical-image-computing medical-image-detection medical-image-processing multiscale object-detection shufflenet small-object-detection swin-transformer transformer yolo yolov7

Last synced: 02 Aug 2024

https://github.com/nupurbhaisare/cup-and-disc-segmentation-for-glaucoma-detection-cdr-calculation-

An adaptive threshold based algorithm for optic disc and cup segmentation in fundus images

adaptive-thresholding ai cdr cdr-calculation cup-segmentation-methods fundus-image-analysis glaucoma-detection ipynb medical-image-analysis medical-image-processing optic-cup optic-cup-disc-segmentation optic-disc python

Last synced: 27 Sep 2024

https://github.com/zylbuaa/TFormer

The official implementation of "TFormer: A throughout fusion transformer for multi-modal skin lesion diagnosis"

medical-image-analysis multi-modal-fusion skin-lesion-classification transformer

Last synced: 01 Aug 2024

https://github.com/faust-prime/X-ray-images-classification-with-Keras-TensorFlow

ConvNet (CNN) implementation to classify x-ray medical images

augmentation cnn cnn-for-visual-recognition cnn-keras cnn-tensorflow computer-vision keras-implementations keras-layer keras-neural-networks medical medical-image-analysis medical-image-processing tensorflow tensorflow-examples

Last synced: 03 Aug 2024

https://github.com/Torpedo2648/PCLMix

[ICIC 2024] Official Pytorch Implementation for "PCLMix: Weakly Supervised Medical Image Segmentation via Pixel-Level Contrastive Learning and Dynamic Mix Augmentation"

computer-vision medical-image-analysis

Last synced: 02 Aug 2024

https://github.com/IBM/MAX-Nucleus-Segmenter

Identify nuclei in a microscopy image and assign each pixel of the image to a particular nucleus

deep-learning docker-image machine-learning machine-learning-models medical-image-analysis object-detection tensorflow

Last synced: 04 Aug 2024

https://github.com/muhammadsanaullah/Brain-Tumor-Detection-from-MRI-Scans

Detection and Extraction of any possibly present tumors in the human brain by processing and analyzing MRI Scans.

matlab medical-image-analysis medical-imaging mri-images

Last synced: 03 Aug 2024

https://github.com/sabaudian/information_retrieval_project

Content-Based Medical Image Retrieval System - IR project

cbir computer-vision cosine-similarity covid-19 information-retrieval jupyter-notebook keras medical-image-analysis medical-imaging mobilenet pycharm pycharm-ide python resnet-50 unimi vgg16

Last synced: 26 Sep 2024