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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with mri
A curated list of projects in awesome lists tagged with mri .
https://github.com/facebookresearch/fastmri
A large-scale dataset of both raw MRI measurements and clinical MRI images.
convolutional-neural-networks deep-learning fastmri fastmri-challenge fastmri-dataset medical-imaging mri mri-reconstruction pytorch
Last synced: 30 Sep 2024
https://github.com/facebookresearch/fastMRI
A large-scale dataset of both raw MRI measurements and clinical MRI images.
convolutional-neural-networks deep-learning fastmri fastmri-challenge fastmri-dataset medical-imaging mri mri-reconstruction pytorch
Last synced: 02 Aug 2024
https://github.com/d-unseductable/ruru
Native Ruby extensions written in Rust
mri native-ruby-extensions ruby ruru rust
Last synced: 02 Aug 2024
https://github.com/d-unsed/ruru
Native Ruby extensions written in Rust
mri native-ruby-extensions ruby ruru rust
Last synced: 31 Jul 2024
https://github.com/rordenlab/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
bids-format dcm dcm2niix dicom dicom-images gz jpeg jpeg-image mri mri-images mricrogl neuroimaging neuroscience nifti nifti-format nii nitrc research
Last synced: 04 Aug 2024
https://github.com/ruby/setup-ruby
An action to download a prebuilt Ruby and add it to the PATH in 5 seconds
actions jruby mri prebuilt-rubies prebuilt-ruby ruby-action truffleruby
Last synced: 29 Sep 2024
https://github.com/Shopify/yjit
Optimizing JIT compiler built inside CRuby
bytecode codegen compiler cruby jit jit-compiler mri ruby ruby-jit
Last synced: 06 Aug 2024
https://github.com/tom-lord/regexp-examples
Generate strings that match a given regular expression
data-generation mri random-string regexp ruby
Last synced: 02 Aug 2024
https://github.com/neuroneural/brainchop
Brainchop: In-browser 3D MRI rendering and segmentation
3d-segmentation deep-learning frontend-app javascript medical-imaging mri mri-segmentation neuroimaging pyodide tensorflowjs three-js
Last synced: 28 Sep 2024
https://github.com/nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
machine-learning mri neuroimaging quality-control quality-reporter
Last synced: 02 Aug 2024
https://github.com/mmuckley/torchkbnufft
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
deep-learning mri nufft pytorch reconstruction
Last synced: 01 Oct 2024
https://github.com/StefanDenn3r/Unsupervised_Anomaly_Detection_Brain_MRI
Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study
anomaly-detection autoencoder deep-learning gan mri segmentation unsupervised-learning variational-autoencoder
Last synced: 30 Jul 2024
https://github.com/cwatson/brainGraph
Graph theory analysis of brain MRI data
brain-connectivity brain-imaging complex-networks connectome connectomics fmri graph-theory mri network-analysis neuroimaging neuroscience r statistics tractography
Last synced: 31 Jul 2024
https://github.com/qMRLab/qMRLab
Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
analysis data-simulation magnetic-resonance-imaging magnetization mapping mri qmri quantitative quantitative-mri relaxometry
Last synced: 02 Aug 2024
https://github.com/ANTsX/ANTsR
R interface to the ANTs biomedical image processing library
brain decomposition mri r registration segmentation
Last synced: 13 Aug 2024
https://github.com/nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
image-processing image-registration image-segmentation mri structural-mri surface-reconstruction
Last synced: 02 Aug 2024
https://github.com/jefffessler/mirt.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
image-reconstruction inverse-problems julia k-space lasso mirt mri nufft optimization-algorithms sinogram sparse-coding tomography
Last synced: 02 Oct 2024
https://github.com/amrzhd/mriskullstripping
Developing a UNet3D model for accurate MRI skull stripping using the Calgary Campinas 359 dataset, enhancing neuroimaging preprocessing workflows.
biomedical-image-processing image-segmentation monai mri mri-images nibabel python pytorch unet unet-image-segmentation
Last synced: 26 Sep 2024
https://github.com/ccipd/MRQy
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
imaging machine-learning medical-image-processing medical-imaging medical-physics mri python quality-assurance quality-control quality-metrics
Last synced: 02 Aug 2024
https://github.com/MICA-MNI/micapipe
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
awesome bids connectome diffusion-mri imageprocessing microstructure mri multimodal neuroimaging resting-state
Last synced: 02 Aug 2024
https://github.com/Qoala-T/QC
Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
freesurfer machine-learning mri quality-control
Last synced: 02 Aug 2024
https://github.com/julianeuroscience/nifti.jl
Julia module for reading/writing NIfTI MRI files
fmri julia mri mri-images nifti
Last synced: 30 Sep 2024
https://github.com/jmtyszka/bidskit
Utility functions for working with DICOM and BIDS neuroimaging data
bids-format conversion dicom fmri-preproc mri neuroimaging nifti-images
Last synced: 04 Aug 2024
https://github.com/mckib2/pygrappa
Python implementations of GRAPPA-like algorithms.
grappa grog image-reconstruction mri parallel-imaging python sense sms
Last synced: 01 Oct 2024
https://github.com/imr-framework/virtual-scanner
An end-to-end hybrid MR simulator/console
Last synced: 02 Aug 2024
https://github.com/bids-apps/MRtrix3_connectome
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
bids bidsapp diffusion-mri mri
Last synced: 02 Aug 2024
https://github.com/khanlab/hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
deep-learning hippocampus mri python segmentation
Last synced: 02 Aug 2024
https://github.com/SVRTK/SVRTK
MIRTK based SVR reconstruction
fetal mri reconstruction retrospecitve slice-to-volume
Last synced: 02 Aug 2024
https://github.com/bids-apps/freesurfer
BIDS app wrapping recon-all from FreeSurfer
anatomical-mri bids bidsapp mri preprocessing
Last synced: 02 Aug 2024
https://github.com/sidchop/brainconn
Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
connectivity connectivity-matrix connectomics eeg meg mri networks neuroimaging
Last synced: 02 Aug 2024
https://github.com/mckib2/phantominator
Generate numerical phantoms.
image-reconstruction mri phantom shepp-logan
Last synced: 01 Oct 2024
https://github.com/FinnBehrendt/patched-Diffusion-Models-UAD
Codebase for Patched Diffusion Models for Unsupervised Anomaly Detection .
anomaly-detection deep-learning diffusion-models mri mri-reconstruction pytorch-implementation pytorch-lightning unsupervised-anomaly-detection unsupervised-learning
Last synced: 30 Jul 2024
https://github.com/bids-apps/HCPPipelines
A BIDS App for minimal preprocessing using the HCP Pipelines
anatomical-mri bids bidsapp functional-mri mri preprocessing
Last synced: 02 Aug 2024
https://github.com/Remi-Gau/online_neuroimaging_resources
a laundry list of resources for MRI, fMRI, EEG, MEG...
eeg fmri meg mri neuroimaging neuroscience resources
Last synced: 02 Aug 2024
https://github.com/lamyj/dicomifier
A medical image converter
bruker conversion dicom medical-imaging mri nifti
Last synced: 04 Aug 2024
https://github.com/magneticresonanceimaging/blochsim.jl
An implementation of the Bloch-McConnell equations for simulating MR spin dynamics.
bloch-mcconnell bloch-simulation julia mri
Last synced: 29 Sep 2024
https://github.com/Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit
The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.
bids bids-apps fetal itk mri nipype super-resolution workflow
Last synced: 02 Aug 2024
https://github.com/PRIME-RE/RheMAP
Non-linear warps between common rhesus macaque brain templates
brainweb image-registration macaque mri nhp prime-dre template trainweb warp
Last synced: 02 Aug 2024
https://github.com/McIntosh-Lab/tvb-ukbb
TVB-UKBB Pipeline: TheVirtualBrain implementation of the UK Biobank pipeline
Last synced: 01 Aug 2024
https://github.com/tarolangner/ukb_segmentation
PyTorch implementation for 2.5D U-Net segmentation of UK Biobank neck-to-knee body MRI
deep-learning kidney mri neural-networks parenchyma pytorch segmentation semantic-segmentation u-net uk-biobank
Last synced: 01 Aug 2024
https://github.com/MIPLabCH/nigsp
NiGSP: a module for graph signal processing on neuroimaging data
brain hacktoberfest mri neuroimaging python
Last synced: 02 Aug 2024
https://github.com/bids-apps/CPAC
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
bids bidsapp mri preprocessing
Last synced: 02 Aug 2024
https://github.com/CBICA/niCHART
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
Last synced: 02 Aug 2024
https://github.com/dkurt/openvino_superres
Intel OpenVINO practice with super resolution network
deep-learning mri opencv openvino super-resolution
Last synced: 02 Oct 2024
https://github.com/cwatson/mri_library
Scripts for MRI preprocessing
brain diffusion-mri dti dwi hpc-applications mri neuroimaging pipeline slurm tractography
Last synced: 02 Aug 2024
https://github.com/bids-apps/BrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.
Last synced: 02 Aug 2024
https://github.com/nipreps/nondefaced-detector
Identify non-defaced datasets before publication
mri neuroimaging preprocessing pretrained-models reproducibility tensorflow-models
Last synced: 26 Sep 2024
https://github.com/bids-apps/oppni
runs fast optimization of preprocessing pipelines for BOLD fMRI
bids bidsapp functional-mri mri
Last synced: 02 Aug 2024
https://github.com/tjiagoM/adni_phenotypes
Identifying healthy individuals with Alzheimer neuroimaging phenotypes in the UK Biobank
adni alzheimer-disease-prediction mcdropout mri nacc ukbiobank
Last synced: 01 Aug 2024
https://github.com/abysslover/deepparcellation
DeepParcellation: deep learning for robust brain MRI parcellation of elderly East Asians
Last synced: 30 Sep 2024
https://github.com/bids-apps/mindboggle
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data
Last synced: 02 Aug 2024
https://github.com/bids-apps/afni_proc
prototype AFNI bids app implmenting participant level preprocessing with afni_proc.py
Last synced: 02 Aug 2024
https://github.com/Image-X-Institute/mri_distortion_toolkit
Characterisation and reporting of geometric distortion in MRI
magnetic-resonance-imaging mri mri-distortion mri-qa reporting spherical-harmonics
Last synced: 02 Aug 2024
https://github.com/picosonic/teletext_mri
Teletext animation of my MRI brain scan on BBC Micro computer
bbc-micro bbcmicro mode7 mri mri-brain mri-images retro retrocomputing teletext
Last synced: 01 Oct 2024
https://github.com/addisonelliott/nifticlib
Nifticlib is a C I/O library for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.
c fmri fmri-image-slices library medical medical-imaging mri mri-images nifti nifti-format
Last synced: 02 Oct 2024
https://github.com/benoitberanger/mri_rf_pulse_simulation_matlab
MRI RF pulse simulation in MALTAB
application gui matlab mri pulse rf simulation
Last synced: 26 Sep 2024
https://github.com/jhund/multi_ruby_runner
Execute Ruby code in different Ruby environments. It lets you for example call JRuby code from MRI. It relies on rbenv or RVM to manage the Ruby runtime environment.
mri rbenv ruby ruby-environment ruby-script rvm
Last synced: 02 Oct 2024
https://github.com/dbnyu/openbirdcagebuilder
Capacitor Calculator for Birdcage RF Coil Design for MRI
antenna-design coils electronics-engineering mri open-source radiofrequency rf
Last synced: 26 Sep 2024
https://github.com/simonneutert/truffle_pig
tiny little worker pool code for some homelab truffleruby vs mri experimenting
Last synced: 03 Oct 2024
