https://github.com/bids-apps/MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

bids bidsapp diffusion-mri mri

Last synced: 29 Apr 2025

https://github.com/bids-apps/freesurfer

BIDS app wrapping recon-all from FreeSurfer

anatomical-mri bids bidsapp mri preprocessing

Last synced: 29 Apr 2025

https://github.com/bids-apps/rsHRF

Resting state HRF estimation from BOLD-fMRI signal

bids bidsapp fmri fmri-data-analysis timeseries

Last synced: 29 Apr 2025

https://github.com/bids-apps/HCPPipelines

A BIDS App for minimal preprocessing using the HCP Pipelines

anatomical-mri bids bidsapp functional-mri mri preprocessing

Last synced: 29 Apr 2025

https://github.com/bids-apps/hyperalignment

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

bids bidsapp

Last synced: 29 Apr 2025

https://github.com/bids-apps/CPAC

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

bids bidsapp mri preprocessing

Last synced: 29 Apr 2025

https://github.com/bids-apps/SPM

BIDS App containing an instance of the SPM software.

bids bidsapp spm

Last synced: 29 Apr 2025

https://github.com/bids-apps/BrainSuite

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

bids bidsapp mri mri-analysis

Last synced: 29 Apr 2025

https://github.com/bids-apps/baracus

Predicts brain age, based on data from Freesurfer 5.3

bids bidsapp

Last synced: 29 Apr 2025

https://github.com/bids-apps/giga_connectome

generate connectome from fMRIPrep outputs

Last synced: 29 Apr 2025

https://github.com/bids-apps/PyMVPA

runs MVPA and RSA analysis BIDS bold derivative data

bids bidsapp multivariate-pattern-analysis mvpa similarity-analysis

Last synced: 29 Apr 2025

https://github.com/bids-apps/BROCCOLI

BIDS App for BROCCOLI

bids bidsapp mri

Last synced: 29 Apr 2025

https://github.com/bids-apps/ndmg

BIDS app for NeuroData's MRI to Graphs pipeline

bids bidsapp connectomics diffusion-mri docker-container singularity-container

Last synced: 29 Apr 2025

https://github.com/bids-apps/nipypelines

Preprocess functional tasks in a BIDS dataset.

bids bidsapp

Last synced: 29 Apr 2025

https://github.com/bids-apps/QAP

PCP Quality Assessment Protocol

bids bidsapp quality-control

Last synced: 29 Apr 2025

https://github.com/bids-apps/oppni

runs fast optimization of preprocessing pipelines for BOLD fMRI

bids bidsapp functional-mri mri

Last synced: 29 Apr 2025

https://github.com/bids-apps/mindboggle

Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data

bids bidsapp mri

Last synced: 29 Apr 2025

https://github.com/bids-apps/tracula

implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

bids bidsapp diffusion-mri

Last synced: 29 Apr 2025

https://github.com/bids-apps/DPARSF

Docker version of DPARSF, also deployed at OpenNeuro.org

Last synced: 29 Apr 2025

https://github.com/bids-apps/afni_proc

prototype AFNI bids app implmenting participant level preprocessing with afni_proc.py

bids bidsap mri preprocessing

Last synced: 29 Apr 2025

https://github.com/bids-apps/brainiak-srm

This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK

bids bidsapp

Last synced: 29 Apr 2025

https://github.com/bids-apps/antsCorticalThickness

BIDS App for calculating cortical thickness using ANTs

bids bidsapp

Last synced: 29 Apr 2025