Ecosyste.ms: Awesome

https://github.com/brain-life/encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

brain brain-connectomes diffusion-mri encoding-connectomes life matlab mba multidimensional-arrays tractography white-matter-connectomes

Last synced: 20 Jun 2024

https://github.com/PennLINC/qsiprep

Preprocessing and reconstruction of diffusion MRI

connectomics diffusion-mri pipelines python tractography

Last synced: 20 Jun 2024

https://github.com/nipreps/dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

bids bids-apps diffusion-mri magnetic-resonance-imaging preprocessing

Last synced: 20 Jun 2024

https://github.com/MICA-MNI/micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

awesome bids connectome diffusion-mri imageprocessing microstructure mri multimodal neuroimaging resting-state

Last synced: 20 Jun 2024

https://github.com/bids-apps/tracula

implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

bids bidsapp diffusion-mri

Last synced: 20 Jun 2024

https://github.com/bids-apps/ndmg

BIDS app for NeuroData's MRI to Graphs pipeline

bids bidsapp connectomics diffusion-mri docker-container singularity-container

Last synced: 20 Jun 2024

https://github.com/bids-apps/MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

bids bidsapp diffusion-mri mri

Last synced: 20 Jun 2024

https://github.com/dipy/dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

bundles contextual-enhancement denoising diffusion-mri dki dti machine-learning medical-imaging microstructure neuroanatomy neuroimaging patch2self python registration segmentation self-supervised-learning spherical-harmonics tracking tractography tractometry