Projects in Awesome Lists tagged with mri-images

https://github.com/rordenlab/dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

bids-format dcm dcm2niix dicom dicom-images gz jpeg jpeg-image mri mri-images mricrogl neuroimaging neuroscience nifti nifti-format nii nitrc research

Last synced: 19 Nov 2024

https://github.com/neurolabusc/nii2mesh

Convert NIfTI volume to triangulated mesh using marching cubes

3d marching-cubes medical-imaging mesh-generation mesh-simplification mri-images nifti-format obj-format

Last synced: 05 Apr 2025

https://github.com/Jfortin1/neuroCombat

Harmonization of multi-site imaging data with ComBat (Python)

combat harmonization mri-images multi-site-imaging neuroimaging normalization python

Last synced: 01 May 2025

https://github.com/ahmedbesbes/mrnet

Building an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)

acl cnn computer-vision convolutional-neural-networks data-augmentation deep-learning knee-injuries medical-imaging mri-applications mri-exams mri-images mrnet paper-implementations pytorch pytorch-tutorial sagittal-plane stanford stanford-ml-group tears transfer-learning

Last synced: 23 Nov 2024

https://github.com/amrzhd/mriskullstripping

Developing a UNet3D model for accurate MRI skull stripping using the Calgary Campinas 359 dataset, enhancing neuroimaging preprocessing workflows.

biomedical-image-processing image-segmentation monai mri mri-images nibabel python pytorch unet unet-image-segmentation

Last synced: 07 Apr 2025

https://github.com/raamana/visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

alignment anatomical-mri cortex fmri freesurfer medical-imaging mri-images neuroimaging neuroscience outlier-detection outlier-removal qc quality-control registration

Last synced: 03 Jan 2025

https://github.com/julianeuroscience/nifti.jl

Julia module for reading/writing NIfTI MRI files

fmri julia mri mri-images nifti

Last synced: 19 Dec 2024

https://github.com/DCAN-Labs/abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

bids-format fmri fmri-preprocessing image-processing mri-images pipeline

Last synced: 01 May 2025

https://github.com/adityajn105/brain-tumor-segmentation-unet

Implementation of U-Net from paper "U-Net: Convolutional Networks for Biomedical Image Segmentation" to segment tumor in given MRI images.

dice-loss image-segmentation keras mri-images tumor-segmentation unet unet-image-segmentation

Last synced: 13 Apr 2025

https://github.com/korbinian90/romeo

Executables for ROMEO unwrapping for Linux, Windows and Mac OSX

mri-images mri-reconstruction phase qsm

Last synced: 02 Mar 2025

https://github.com/sartajbhuvaji/brain-tumor-classification-dataset

This repository is part of the Brain Tumor Classification Project. The repo contains the unaugmented dataset used for the project

brain braintumorclassification classification dataset mri mri-images

Last synced: 16 Jan 2025

https://github.com/korbinian90/mriresearchtools.jl

Specialized tools for MRI

mri mri-images

Last synced: 02 Mar 2025

https://github.com/dhanya-abhirami/brain-tumour-segmentation

Use of Image Processing to detect brain tumour in MRI Scan

brain-imaging brain-tumor-segmentation image-processing mri-images sobel-gradient thresholding watershed-algorithm

Last synced: 15 Apr 2025

https://github.com/dipterix/three-brain-js

Javascript engine for 3D brain model (used by RAVE project)

ecog electrode-localization freesurfer ieeg mri mri-brain mri-images neuroscience nifti-viewer seeg webgl2

Last synced: 30 Apr 2025

https://github.com/Open-Minds-Lab/mrQA

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

brain ismrm mr-image mri mri-brain mri-images neuroimaging neuroscience niqc qa quality-assurance quality-control

Last synced: 22 Feb 2025

https://github.com/slabua/dicomreader

DicomReader is a simple Java Dicom files decipher. It handles headers and images within as well; data (headers and pixel-value images) will be saved into ascii clear text files.

dicom dicom-files dicom-images dicom-standard mri mri-images

Last synced: 04 Apr 2025

https://github.com/dayyass/synthetic-health-data-hackathon-2020

Synthetic Health Data Hackathon 2020 Alzheimer's MRI Analysis solution.

bioinformatics computer-vision image-classification mri-images pytorch synthetic-data

Last synced: 19 Feb 2025

https://github.com/brudfors/synthesize-brain-mri-ct

Model-based image synthesize of CT and MR brain images.

ct-images image-synthesis image-to-image-translation image-translation mri-images neuroimaging

Last synced: 10 Feb 2025

https://github.com/korbinian90/magnitude-intensity-correction

Presentation of Magnitude Intensity Corrction method

julia mri mri-images mri-reconstruction

Last synced: 09 Apr 2025

https://github.com/d-f/brain-image-classification

A basic example of image classification with PyTorch, included with instructions on how to re-create results and the performance of the best performing model

brain-tumor-classification cancer-imaging convolutional-neural-networks deep-learning image-classification medical-image-processing mri-images pytorch tumor-detection

Last synced: 07 Apr 2025

https://github.com/niklashenning/brain-tumor-detection

Machine learning model that is able to detect and classify brain tumors in MRI scans

classification computer-vision image-classification machine-learning mri-classification mri-images

Last synced: 14 Dec 2024

https://github.com/javaidiqbal11/automatic-brain-tumor-segmentation-python

A model build for the brain tumor segmentation using Brain MRI.

brain mri-images tumor-segmentation

Last synced: 22 Feb 2025

https://github.com/ryandsilva/alzheimers-detection

Alzheimers Detection using MRI Scans :hospital:

alzheimers densenet fastai mri-images oasis-dataset

Last synced: 11 Apr 2025

https://github.com/pegah-ardehkhani/brain-mri-segmentation

U-Net from Scratch for Brain Tumor Segmentation

ai-for-medical-diagnosis brain-imaging brain-mri brain-mri-images deep-learning deep-neural-networks dice-coefficient healthcare-imaging iou medical-image-processing medical-imaging mri mri-brain mri-brain-segmentation mri-images python segmentation tensorflow u-net u-net-keras

Last synced: 25 Feb 2025

https://github.com/fahimfba/skull-stripping-3d-brain-mri

Apply Skulll Stripping to any 3D Brain MRI images

mri mri-brain mri-images skull skull-stripping

Last synced: 12 Apr 2025

https://github.com/edgarlefevre/napari-deepmeta

Segment mouse lungs and metastasis on MRI images.

cookiecutter-napari-plugin deeplearning image-segmentation lungs-segmentation mri-images napari napari-plugin tensorflow

Last synced: 21 Mar 2025

https://github.com/fperdigon/DeepVertebralLabeling_RV

Deep learning model for vertebral labeling on MRI

automatic-labelling deep-learning keras-tensorflow mri-images vertebra

Last synced: 14 Mar 2025

https://github.com/harunkurtdev/mri_tumor_marker

By receiving and processing mr images, we can make the images better later on.

flet flet-dev mri-images python

Last synced: 27 Feb 2025

https://github.com/dfsp-spirit/neuro

Go module for reading and writing structural neuroimaging file formats. Supports FreeSurfer MGH, MGZ, and related formats.

biomedical brain fileformats freesurfer go golang mri mri-images neuroimaging neuroscience

Last synced: 06 Apr 2025

https://github.com/addisonelliott/nifticlib

Nifticlib is a C I/O library for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

c fmri fmri-image-slices library medical medical-imaging mri mri-images nifti nifti-format

Last synced: 28 Mar 2025

https://github.com/muhammadsanaullah/Brain-Tumor-Detection-from-MRI-Scans

Detection and Extraction of any possibly present tumors in the human brain by processing and analyzing MRI Scans.

matlab medical-image-analysis medical-imaging mri-images

Last synced: 15 Nov 2024

https://github.com/gabboraron/diagnosztikai_celu_orvosi_kepalkotas

Képalkotás szenzor adatokból

computer-graphics computer-vision confocal-microscopy ct-imaging cti-imaging medical-image-processing medical-imaging microscopy mri-images near-infrared-spectroscopy optical-coherence-tomography pet-imaging positron-emission-tomography raman-spectroscopy thermography ultrasound-imaging x-ray-images

Last synced: 06 Apr 2025

https://github.com/omar-karimov/arztai

Innovative digital health platform

app cnn-classification deep-learning deployment health keras machine-learning medical-image-processing mri-images random-forest streamlit streamlit-dashboard tensorflow transfer-learning

Last synced: 15 Mar 2025

https://github.com/imperialcollegelondon/strainmap

mri-images python tkinter

Last synced: 07 Apr 2025

https://github.com/brianmanderson/unzip_unlink_csharp

An application built to easily change DICOM Series Instance UID, SOP Instance UID, and Frame of Reference UID. Can be useful in clinics performing 4D registrations with the freebreathing scan, and/or registering MRI images which are inherently co-registered.

dicom dicom-images gui-application mri-images registration

Last synced: 09 Apr 2025

https://github.com/recker-dev/alzheimer-cnn-tinyvgg16

This project uses a TinyVGG16-based CNN to classify MRI scans for Alzheimer's Disease stages: Mild Impairment, Moderate Impairment, No Impairment, and Very Mild Impairment. It includes Jupyter notebooks for training and prediction, and a Streamlit app for easy inference. The model achieves high metrics in predicting Alzheimer's stages.

ai ai-in-healthcare alzeheimers cnn-classification deep-learning image-classification kaggle-dataset medical-imaging mri-images neuroimaging pytorch pytorch-cnn-classification streamlit streamlit-webapp tinyvgg

Last synced: 27 Mar 2025

https://github.com/uditmahato/brain_tumor_detection

This repository hosts a PyTorch-based EfficientNet model and Streamlit application for classifying MRI brain scans

mri-images streamlit

Last synced: 03 Apr 2025

https://github.com/picosonic/teletext_mri

Teletext animation of my MRI brain scan on BBC Micro computer

bbc-micro bbcmicro mode7 mri mri-brain mri-images retro retrocomputing teletext

Last synced: 04 Apr 2025

https://github.com/atharvapathak/style_transfer_gan_project

To ensure a better diagnosis of patients, doctors may need to look at multiple MRI scans. What if only one type of MRI needs to be done and others can be auto-generated? Generative Adversarial Networks (GANs) have been used for generating deepfakes, new fashion styles and high-resolution pictures from the low-resolution ones

cyclegan deep-learning gans generative-adversarial-network keras mri-images photo style-transfer tensorflow u-net

Last synced: 05 Mar 2025

https://github.com/dino-boooo/instrumentation-and-system-design-for-advanced-mri-imaging

This project focuses on the design, construction, and application of MRI imaging instrumentation. It explores the architecture of an MR spectrometer and the gradient subsystem used for image localization.

ad2 hardware-implementation instrumentation mri-images rf-signal signal-processing

Last synced: 08 Apr 2025

https://github.com/drpatelh/nf-core-mrimorph

UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data

morphometry mri mri-brain mri-images nextflow nf-core pipeline workflow

Last synced: 03 Mar 2025

https://github.com/raamana/protocol

generic framework to develop protocols, with an initial focus medical imaging acquisition

dicom medical-imaging mri-images mri-scans neuroimaging protocols quality-assurance siemens

Last synced: 24 Mar 2025

https://github.com/victoorv/mri_segmentation

U-Net for MRI segmentation.

computer-vision data-science image-processing image-segmentation kaggle-dataset machine-learning mri mri-brain mri-data mri-images mri-segmentation opencv pytorch segmentation u-net u-net-image-segmentation u-net-segmentation

Last synced: 25 Feb 2025

https://github.com/repo-bilalnaeem/brain-segmentation

This project focuses on the segmentation of brain tumors using the Brain Tumor Segmentation (BRATs) dataset. The primary goal was to develop a deep learning model capable of accurately identifying and segmenting tumor regions in MRI scans.

brainsegmentation brats-challenge brats-dataset image-classification image-processing image-segmentation mri-images tumor tumor-detection tumor-segmentation unet-image-segmentation

Last synced: 20 Feb 2025

https://github.com/netzkolchose/brainage-designer

BrainAGE (Brain Age Gap Estimation) framework with browser interface

age-estimation brainage machine-learning mri-images web-ui

Last synced: 26 Mar 2025

https://github.com/lucaspadoni/mri-brain-parts-detection

Mathematica here is used for the detection of various brain parts on MRI brain images. The concept of image processing and segmentation was used to outline the brain areas in the given set of images.

brain contour-detection mathematica medical-image-processing mri mri-brain mri-images object-detection