Projects in Awesome Lists tagged with nifti

https://github.com/libvips/libvips

A fast image processing library with low memory needs.

c cpp gif graphicsmagick heic image-processing imagemagick jpeg libvips nifti openexr openslide pdf pdfium png svg tiff webp

Last synced: 16 Dec 2024

https://github.com/rordenlab/dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

bids-format dcm dcm2niix dicom dicom-images gz jpeg jpeg-image mri mri-images mricrogl neuroimaging neuroscience nifti nifti-format nii nitrc research

Last synced: 19 Nov 2024

https://github.com/fnndsc/ami

AMI Medical Imaging (AMI) JS ToolKit

ami dicom dicom-images fs javascript medical nifti nifti-format nrrd stl threejs trk volume-rendering vtk webgl xtk

Last synced: 21 Dec 2024

https://github.com/FNNDSC/ami

AMI Medical Imaging (AMI) JS ToolKit

ami dicom dicom-images fs javascript medical nifti nifti-format nrrd stl threejs trk volume-rendering vtk webgl xtk

Last synced: 06 Dec 2024

https://github.com/nipy/nibabel

Python package to access a cacophony of neuro-imaging file formats

afni-brik-head brain-imaging cifti-2 data-formats dicom ecat gifti minc neuroimaging nifti python streamlines tck trk

Last synced: 31 Oct 2024

https://github.com/niivue/niivue

a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.

image nifti niivue viewer web webgl2

Last synced: 20 Dec 2024

https://github.com/rordenlab/MRIcroGL

v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

bids-format dicom dicom-viewer glsl lazarus mricrogl nifti opengl visualization volume-rendering volume-renderings

Last synced: 19 Nov 2024

https://github.com/alexlaurence/nifti-image-converter

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

convert-images converter matlab medical-imaging neuroimaging nifti opencv png python

Last synced: 17 Dec 2024

https://github.com/fitushar/3d-guidedgradcam-for-medical-imaging

This Repo containes the implemnetation of generating Guided-GradCAM for 3D medical Imaging using Nifti file in tensorflow 2.0. Different input files can be used in that case need to edit the input to the Guided-gradCAM model.

3d-guided-grad-cam 3d-models cnn-visualization cnn-visualization-technique ctci explainable-ai explainable-ai-in-medical-imaging explainable-artificial-intelligence guided-grad-cam medical-imaging nifti tensorflow-examples tensorflow2

Last synced: 12 Nov 2024

https://github.com/julianeuroscience/nifti.jl

Julia module for reading/writing NIfTI MRI files

fmri julia mri mri-images nifti

Last synced: 19 Dec 2024

https://mfroeling.github.io/QMRITools/

Processing and visualization tools for quantitative MRI data

denoising diffusion dixon dti elastix epg extended-phase-graphs fasculation ivim jcoupling mathematica muscle nifti nii noise-suppression registration relaxometry spectroscopy tractography visualization

Last synced: 20 Nov 2024

https://github.com/ericspod/eidolon

Biomedical Visualization and Analysis Framework

3d-graphics biomedical brc data-analysis data-visualization dicom image-registration irtk king-college-london medical-image-computing medical-imaging mirtk nifti ogre3d pyqt4 python rendering visualization

Last synced: 12 Dec 2024

https://github.com/enet4/nifti-rs

Rust implementation of the NIfTI-1 format

hacktoberfest medical-imaging neuroimaging nifti nifti-format rust

Last synced: 27 Oct 2024

https://github.com/bhklab/med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

deep-learning dicom machine-learning medical nifti nrrd python pytorch torch

Last synced: 16 Dec 2024

https://github.com/anibalsolon/vscode-neuro-viewer

Check metadata and visualize neuroimages within VSCode.

brainweb data-visualization neuroimaging neuroscience nifti vscode vscode-extension

Last synced: 07 Nov 2024

https://github.com/lamyj/dicomifier

A medical image converter

bruker conversion dicom medical-imaging mri nifti

Last synced: 17 Nov 2024

https://github.com/neurolabusc/mricro

macOS Xcode GLSL Volume Render for NIfTI, Bio-Rad Pic, NRRD, Philips, ITK MetaImage, AFNI, Freesurfer, DICOM images.

dicom nifti volume-renderer

Last synced: 13 Nov 2024

https://github.com/lamyj/erwin

Quantitative MRI toolbox in Python

ants cbf diffusion-mri field-mapping fsl magnetization-transfer motion-correction mri mrtrix3 nifti quantitative quantitative-susceptibility-mapping relaxometry segmentation

Last synced: 17 Nov 2024

https://github.com/vsoch/som

Stanford open modules for python

api dicom medical-imaging nifti standards

Last synced: 14 Oct 2024

https://github.com/arindas/papaya-react

React wrapper around Papaya medical image viewer.

dicom medical-imaging nifti reactjs

Last synced: 23 Nov 2024

https://github.com/lren-chuv/data-tracking

This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.

data-factory dicom nifti python

Last synced: 18 Nov 2024

https://github.com/enet4/nifti-stream

Simple, stream-based NIfTI-1 reader in JavaScript

javascript nifti reader

Last synced: 07 Nov 2024

https://github.com/lren-chuv/data-factory-airflow-dags

DAGs adapting the MRI preprocessing pipeline to Airflow

airflow data-factory mri neuroimaging nifti

Last synced: 18 Nov 2024

https://github.com/niivue/ct2print

ct2print for converting voxel images to mesh for 3D printing

ct mri nifti wasm

Last synced: 17 Dec 2024

https://github.com/addisonelliott/nifticlib

Nifticlib is a C I/O library for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

c fmri fmri-image-slices library medical medical-imaging mri mri-images nifti nifti-format