Projects in Awesome Lists by dfsp-spirit

https://github.com/dfsp-spirit/fsbrain

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

3d brain dti freesurfer mesh mri neuroimaging r research surface visualization voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/freesurferformats

GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.

brain brain-atlas brain-surfaces curv dti fileformats freesurfer label mesh mgh mri neuroimaging parcellation r research surface voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/spirit-quake-maps-gpl

The sources of my maps or levels for the Quake series FPS games, published under the GPL.

3d-models fps-game level-design levels maps quake spirit

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/neuroformats.jl

Handling of structural neuroimaging file formats for Julia.

brain cortex dti fileformats freesurfer julia mesh mri neuroimaging neuroscience surface voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/brainload

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

brain freesurfer mesh morphometry mri neuroimaging nibabel python surface voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/wal

Quake modding toolkit for R. Can read, export and import Quake bitmap images in WAL and Q1 texture formats, read and export MDL and MD2 models, extract PAK and WAD archives.

image pak quake quake-engine quake2 textures wad wal

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/freesurfer_parallel_scripts

Shell scripts to run FreeSurfer's recon-all in parallel on multi-core machines.

bash freesurfer neuroimaging parallel-computing workstation

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/pkgfilecache

GNU R package that allows package authors to cache data files in user directories.

cache checksum cran developer-tools download files filestorage home-directory r

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/neuroformats-rs

Handling of structural neuroimaging file formats for Rust.

3d brain brainanatomy fileformats freesurfer images mesh mri neuroimaging neuroscience rust voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/vplg

The Visualization of Protein-Ligand Graphs software that powers the PTGL webserver at http://ptgl.uni-frankfurt.de/. One of my PhD projects.

bioinformatics computational-biology database graphs pdb protein protein-structure webserver webservices

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/libfs

A header-only, no-dependency, C++11 library for accessing FreeSurfer neuroimaging file formats.

brain fileformats freesurfer label mesh mgh mri neuroimaging parser surface volume voxel

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/regfusionr

R implementation of registration fusion method for MNI152 - 305 mapping.

freesurfer fsaverage mni152 mni305 mri neuroimaging registration registration-fusion voltosurf

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/haze

Fast smoothing of per-vertex data on triangular meshes for R.

per-vertex smoothing triangular-mesh

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/abide_preproc_smri_freesurfer6

Data from our own pre-processing of the ABIDE I sMRI dataset (1035 subjects) in FreeSurfer v6.

abide-data brain brain-imaging computational-neuroimaging dataset derived-data freesurfer mri

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/cpp_geodesics

Fast computation of geodesic distances and related mesh descriptors on (brain surface) meshes in C++ and OpenMP.

brain cpp distance geodesics mesh openmp

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/brainnet

Machine learning on neuroimaging data, for R.

internal-project machine-learning neuroimaging r

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/reproducible_science

Introduction: towards reproducible science using version control and GNU R

git publications r science

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/pcx

Read PCX bitmap image files in R and convert to other formats.

bitmap file formats image pcx quake quake-engine

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/meshlearn

AI model to predict computationally expensive vertex-wise descriptors like the local gyrification index from the mesh structure.

ai brain deep-learning gradient-boosting machine-learning mesh ml mri neuroimaging per-vertex python tensorflow triangular-mesh

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/brainview-rs

A simple real-time brain visualization tool for Rust, based on the three-d crate.

brain-visualization neuroimaging rust surface

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/comp_neuro_science

My playground for trying some computational neuro science tools. Just ignore this, you don't want it.

matlab neuroscience visualization

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/anonsurfer

Anonymization of freesurfer output based on metadata dropping and defacing.

anonymization deface freesurfer metadata mri privacy-protection

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/system_config

My system configuration (bash_profile, bashrc, vimrc, ...) including my setup for popular neuroimaging software.

bash infrastructure linux linux-shell

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/dfsp-spirit.github.io

Repo for my personal website, generated with Jekyll. Ignore.

jekyll ruby static-website

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/brainloc

Given a brain coordinate or cluster in MNI305 space, compute MNI152 and Talairach coordinates and find the closest brain regions.

atlas brain coordinate-systems distances freesurfer fsaverage mri neuroimaging

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/pyhaze

Fast smoothing of per-vertex data on triangular meshes for Python.

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/neuro

Go module for reading and writing structural neuroimaging file formats. Supports FreeSurfer MGH, MGZ, and related formats.

biomedical brain fileformats freesurfer go golang mri mri-images neuroimaging neuroscience

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/jsfun

A collection of fun stuff in processings.js and p5js, mainly tiny web games and animations..

javascript p5js processing visualization web

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/jneuroformats

Reading and writing structural neuroimaging file formats for Java.

brain fileformats java mri neuroimaging

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/js-object-util

A simple static utility class to access nested object properties. Inspired by Immutable API methods like hasIn and getIn.

ignore javascript test useless

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/way2close

Unity C# space action game for mobile.

csharp game-development mobile space-game unity3d

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/playground

My playground for trying out software, often computational neuroscience packages. Ignore this, you don't want it.

playground snippets

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/wordpress-child-theme-twentyseventeen-privacy

Twenty seventeen child theme to improve privacy of web site visitors.

privacy wordpress wordpress-plugin

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/dfsp-spirit.r-universe.dev

R-universe config repo for https://dfsp-spirit.r-universe.dev. Just ignore this.

infrastructure r

Last synced: 31 Oct 2024

https://github.com/dfsp-spirit/photowebpage

A simple Python script to generate a static HTML gallery page that displays all images in a directory. Intended for my personal use only. Ignore this.

Last synced: 31 Oct 2024