Projects in Awesome Lists by andreped

https://github.com/andreped/livermask

💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model

command-line-tool ct deep-learning free-to-use hepatic-veins liver liver-segmentation liver-vessels livermask open parenchyma portal-veins pretrained-models segmentation unet vessels

Last synced: 05 Apr 2025

https://github.com/andreped/nocodeseg

🔬 Code-free deep segmentation for computational pathology

annotation convolutional-neural-networks cpp deep-learning deepmib digital-pathology fastpathology java matlab medical-imaging multi-class open-annotations open-datasets qupath semantic-segmentation u-net

Last synced: 18 Aug 2025

https://github.com/andreped/gradientaccumulator

:dart: Accumulated Gradients for TensorFlow 2

accumulated-batch-normalization accumulated-gradients adaptive-gradient-clipping batch-size deep-learning distributed-training float16 gpu gradient-accumulation hacktoberfest huggingface keras memory-constraints mixed-precision multi-gpu tensorflow tensorflow2 tf2 tpu

Last synced: 13 Apr 2025

https://github.com/andreped/super-ml-pets

🐢 AI for Super Auto Pets

ai artificial-intelligence computer-vision deep-learning game-development hacktoberfest machine-vision opencv reinforcement-learning sap sapai sapai-gym sb3 super-auto-pets super-ml-pets template-matching

Last synced: 13 Apr 2025

https://github.com/andreped/fast-stain-normalization

:star2: GPU-accelerated stain normalization command line tool

computational-pathology cpp deep-learning digital-pathology fast histopathology-images python stain-normalization tensorflow tensorflow2 torch

Last synced: 13 Apr 2025

https://github.com/andreped/vsi2tif

Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

bftools bioformats cellsens converter cucim fast generic olympus openslide pyfast pyramidal pyvips tif tiff vips vsi wsi

Last synced: 18 Jul 2025

https://github.com/andreped/ironflow

📳 IronFlow: Cross-platform mobile app for strength training progress tracking

android apk database fitness healthcare ios ipa iron-flow ironflow sqlite strength strength-lifting tracking tracking-data

Last synced: 27 Oct 2025

https://github.com/andreped/dmdetect

Code relevant for training, evaluating, assessing, and deploying CNNs for image classification and segmentation of Digital Mammography images

breast-cancer cnn-classification deep-learning digital-mammography explainable-ai keras-tensorflow mammography tensorflow2 tf-data tfrecords

Last synced: 24 Aug 2025

https://github.com/andreped/dss

:vibration_mode: From training of transformers to real-time development in cross-platform mobile apps!

android cnn data-visualization deep-learning dss flutter internet-of-things ios iot mobile real-time recording rnn sensor tensorboard tensorflow tf2 tflite vision-transformer vit

Last synced: 13 Apr 2025

https://github.com/andreped/pls-net

Reimplementation of the PLS-Net architecture used for lung lobe segmentation in CT

ct deep-learning efficient lightning lobe lung lung-lobe pls-net plsnet pytorch pytorch-lightning segmentation separable-convolutions u-net

Last synced: 12 Mar 2026

https://github.com/andreped/adverse-events

IEEE BIBM 2021: Bayesian optimization-guided topic modeling for automatic detection of sepsis-related events from free text

adverse-events bayesian-optimization classification data-set detection ieee-bibm latent-dirichlet-allocation lda machine-learning natural-language-processing sepsis

Last synced: 13 Apr 2025

https://github.com/andreped/fp-dsa-plugin

Digital Slide Archive plugin to enable FAST deployment of pretrained CNNs for digital pathology

cpp deep-learning digital-pathology digital-slide-archive fast fastpathology gpu histopathology large-image plugin python real-time tensorrt

Last synced: 13 Apr 2025

https://github.com/andreped/transcribe.io

:rocket: Private real-time transcription mobile app using on-device AI models

android csharp dotnet dotnet-maui ios maui mobile mobile-app real-time speech-to-text transcription whisper

Last synced: 17 Apr 2026

https://github.com/andreped/tumor-growth

🧠 Growth dynamics of untreated meningiomas

brain cancer ct gompertz growth meningioma mixed-effect mri multi-level neuro nonlinear python stata statistics tumor-growth

Last synced: 18 Feb 2026

https://github.com/andreped/pathology-representation-simulation

🚀 Create your own simulation of t-SNE on histopathology images!

clustering dimensionality-reduction histopathology pathology representation simulation t-sne tensorboard tensorboard-projector training wsi

Last synced: 02 Sep 2025

https://github.com/andreped/wsi-visualization-demo

🔬 Simple containerised whole slide image rendering in the browser

browser deepzoom docker dzi histopathology html http hugging-face hugging-face-spaces huggingface nginx openseadragon pathology real-time web whole-slide-image wsi

Last synced: 24 Jan 2026

https://github.com/andreped/dexgrade

Pokémon card grading mobile app

Last synced: 21 Feb 2026

https://github.com/andreped/herai

Web service for testing AI-based models on your own data

Last synced: 24 Jan 2026

https://github.com/andreped/vit-explainer

🔥 Demonstrating Explainable AI with Vision Transformer in web app

ai explainable-ai gradio huggingface huggingface-spaces saliency-map transformers vision-transformer vit xai

Last synced: 13 Apr 2025

https://github.com/andreped/chatbot-streamlit-demo

Develop accessible ChatBot with Azure OpenAI and Streamlit

azure chatbot data data-mining huggingface huggingface-spaces large-language-models llm openai python research streamlit web-application

Last synced: 01 Aug 2025

https://github.com/andreped/neukit

:hugs: neukit: web application for automatic brain extraction and preoperative tumor segmentation from MRI

brain brain-extraction deep-learning demo glioma high-grade huggingface low-grade meningioma metastasis mri pretrained raidionics segmentation spaces t1 tumor web-app

Last synced: 13 Apr 2025

https://github.com/andreped/wsi-annotation-demo

🔬 Annotating whole slide images through the browser

annotation annotorious deep-zoom-image docker histpathology hugging-face hugging-face-spaces javascript openseadragon pathology whole-slide-image wsi

Last synced: 22 Apr 2025

https://github.com/andreped/t-loss-tf

Robust T-Loss for Medical Image Segmentation with TensorFlow backend

image-analysis keras medical python semantic-segmentation t-loss tensorflow tf tloss

Last synced: 06 May 2026

https://github.com/andreped/nlp-mtl

Training neural networks to solve multiple tasks simultaneously from free text through multi-task learning

bert-embeddings keras multi-task-learning natural-language-processing neural-networks nlp scikit-learn

Last synced: 09 May 2026

https://github.com/andreped/melanomai

melanoma detection using mobile app

Last synced: 21 Dec 2025

https://github.com/andreped/qupath-project-fixer

Simple program that makes it possible to directly run other people's qupath projects, without the need to re-importing all images again.

Last synced: 25 Jan 2026

https://github.com/andreped/referencebot

KnowledgeGPT + Azure OpenAI = <3

ai azure bot chatbot huggingface huggingface-spaces knowledge-gpt langchain llm mit openai streamlit

Last synced: 09 Apr 2026

https://github.com/andreped/andreped

My personal repository

Last synced: 26 Jan 2026

https://github.com/andreped/writestuff

A simple mobile app for writing notes.

android app ios mobile notes writestuff

Last synced: 27 Jan 2026

https://github.com/andreped/deepmil

Last synced: 01 Jul 2026

https://github.com/andreped/andreped.github.io

Personal website

Last synced: 21 Dec 2025

https://github.com/andreped/ohif4hf

🤗 Showcasing AI solutions for medical applications in OHIF using Hugging Face

ai artificial-intelligence huggingface machine-learning medical-image-analysis ohif open-source pathology plugins radiology web-application

Last synced: 02 Feb 2026

https://github.com/andreped/inf1600-ai-workshop

🔥 Workshop in AI Deployment (INF-1600, UiT)

artificial-intelligence demonstration github github-actions gradio huggingface huggingface-spaces image-classification transformers vision-transformers vit web-application

Last synced: 13 Apr 2025

https://github.com/andreped/qpdata-fixer

Simple program which converts the qpdata-names, such that if they are accessible in QuPath-0.1.2, if they were produced in a newer version

Last synced: 27 Jan 2026

https://github.com/andreped/postly

:hugs: Simple twitter clone implemented in streamlit

app clone demo huggingface media platform python social spaces streamlit twitter web

Last synced: 30 Apr 2026

Last synced: 27 Jan 2026

Last synced: 26 Jun 2025