Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

https://github.com/spack/spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

build-tools hpc linux macos package-manager python radiuss scientific-computing spack

Last synced: 03 Jul 2024

https://github.com/xitorch/xitorch

Differentiable scientific computing library

linear-algebra machine-learning numerical-calculations pytorch scientific-computing

Last synced: 03 Jul 2024

https://github.com/VIDA-NYU/reprozip

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant

Last synced: 02 Jul 2024

https://github.com/pharmai/plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

bioinformatics docker openbabel pdb plip protein-structure python-bindings scientific-computing singularity

Last synced: 28 Jun 2024

https://github.com/InsightSoftwareConsortium/ITK

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing

Last synced: 27 Jun 2024

https://github.com/weisscharlesj/SciCompforChemists

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

biochemistry book chemical chemistry chemists computer-programming computing jupyter-lab jupyter-notebooks jupyterlab nmrglue numpy python science scientific-computing scipy simulations textbook

Last synced: 23 Jun 2024

https://github.com/ruivieira/crystal-gsl

GNU Scientific Library bindings for Crystal

bindings crystal crystal-gsl gsl mathematics science scientific-computing

Last synced: 20 Jun 2024

https://github.com/btel/python-in-neuroscience-tutorials

Collection of tutorials about methods of computational neuroscience using Python

computational-neuroscience jupyter-notebook neuroscience python scientific-computing tutorials

Last synced: 20 Jun 2024

https://github.com/bshoshany/thread-pool

BS::thread_pool: a fast, lightweight, and easy-to-use C++17 thread pool library

concurrency cplusplus cplusplus-17 cpp cpp17 easy-to-use multi-threading multithreading parallel scientific-computing thread-pool threading threadpool

Last synced: 17 Jun 2024

https://github.com/dengwirda/jigsaw-python

Python bindings for JIGSAW: a Delaunay-based unstructured mesh generator.

delaunay-refinement delaunay-triangulation mesh-generation python scientific-computing triangulation voronoi-tessellation

Last synced: 13 Jun 2024

https://github.com/dengwirda/jigsaw

JIGSAW is a Delaunay-based unstructured mesh generator for two- and three-dimensional geometries.

delaunay delaunay-refinement delaunay-triangulation laguerre-tessellation mesh mesh-generation scientific-computing triangulation voronoi voronoi-tessellation

Last synced: 13 Jun 2024

https://github.com/wkcn/MobulaOP

A Simple & Flexible Cross Framework Operators Toolkit

cross-framework cupy deep-learning mxnet numpy operators pytorch scientific-computing

Last synced: 12 Jun 2024

https://github.com/Hedgehog-Computing/hedgehog-lab

Run, compile and execute JavaScript for Scientific Computing and Data Visualization TOTALLY TOTALLY TOTALLY in your BROWSER! An open source scientific computing environment for JavaScript TOTALLY in your browser, matrix operations with GPU acceleration, TeX support, data visualization and symbolic computation.

computer-algebra data-visualization gpu-acceleration javascript latex machine-learning matrix-library scientific-computing symbolic-computation tex webgl webgl2

Last synced: 11 Jun 2024

https://github.com/eltonlaw/impyute

Data imputations library to preprocess datasets with missing data

imputation missing-data python scientific-computing

Last synced: 07 Jun 2024

https://github.com/NAGAGroup/Scalix

Scalix is a data parallel compute library that automatically scales to the available compute resources.

cuda hpc scientific-computing

Last synced: 05 Jun 2024

https://github.com/OpenChemistry/avogadrolibs

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

avogadro chemistry compchem computational-chemistry cross-platform desktop hacktoberfest open-science open-source openchemistry opengl qt5 scientific-computing visualization

Last synced: 01 Jun 2024

https://github.com/arvkevi/kneed

Knee point detection in Python :chart_with_upwards_trend:

data-analysis data-science elbow-method knee-point python scientific-computing systems

Last synced: 31 May 2024

https://github.com/Mathepia/awesome-sciml

Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.

bayesian-deep-learning bayesian-inference data-science deep-learning julia machine-learning mathematical-biology mathematical-epidemiology neural-ode physics-informed-neural-networks pinns probabilistic-machine-learning probabilistic-programming scientific-computing scientific-machine-learning time-series universal-differential-equations

Last synced: 27 May 2024

https://github.com/scipy/scipy

SciPy library main repository

algorithms closember python scientific-computing scipy

Last synced: 21 May 2024

https://github.com/NeuroDiffGym/neurodiffeq

A library for solving differential equations using neural networks based on PyTorch, used by multiple research groups around the world, including at Harvard IACS.

artificial-intelligence boundary-value-problem deep-learning differential-equations initial-value-problem mathematical-modelling neural-networks ode odes pde-solver physics-informed-neural-networks pinn pypi pytorch scientific-computing time-series

Last synced: 21 May 2024

https://github.com/BMClab/BMC

Notes on Scientific Computing for Biomechanics and Motor Control

biomechanics biomedical-engineering jupyter-notebook motor-control python scientific-computing

Last synced: 21 May 2024

https://github.com/maroba/findiff

Python package for numerical derivatives and partial differential equations in any number of dimensions.

derivative finite-difference finite-difference-coefficients finite-differences numerical-methods partial-differential-equations pde scientific-computing

Last synced: 21 May 2024

https://github.com/kailaix/ADCME.jl

Automatic Differentiation Library for Computational and Mathematical Engineering

automatic-differentiation machine-learning neural-networks numerical-pdes optimization scientific-computing tensorflow

Last synced: 21 May 2024

https://github.com/grailbio/reflow

A language and runtime for distributed, incremental data processing in the cloud

analysis-pipeline aws bioinformatics-pipeline cloud-computing data-science golang language runtime scientific-computing

Last synced: 20 May 2024

https://github.com/goplus/pandas

Flexible and powerful data analysis / manipulation library for Go+, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

data-analysis data-science data-tech go golang gop goplus pandas scientific-computing

Last synced: 18 May 2024

https://github.com/SciNim/flambeau

Nim bindings to libtorch

hacktoberfest nim scientific-computing torch

Last synced: 17 May 2024

https://github.com/shadow/shadow

Shadow is a discrete-event network simulator that directly executes real application code, enabling you to simulate distributed systems with thousands of network-connected processes in realistic and scalable private network experiments using your laptop, desktop, or server running Linux.

control emulation experimentation networking realism scalability science-research scientific-computing simulation tor

Last synced: 16 May 2024

https://github.com/opendatacube/datacube-core

Open Data Cube analyses continental scale Earth Observation data through time

gdal gis hacktoberfest netcdf numpy python raster remote-sensing scientific-computing

Last synced: 15 May 2024

https://github.com/senseyeio/roger

Golang RServe client. Use R from Go

data-science go r rserve scientific-computing

Last synced: 13 May 2024

https://github.com/LLNL/conduit

Simplified Data Exchange for HPC Simulations

cpp data-management fortran hdf5 hpc json llnl python radiuss scientific-computing yaml

Last synced: 10 May 2024

https://github.com/GIS4WRF/gis4wrf

QGIS toolkit 🧰 for pre- and post-processing 🔨, visualizing 🔍, and running simulations 💻 in the Weather Research and Forecasting (WRF) model 🌀

academia air-quality atmospheric-modelling atmospheric-science forecasting-models gis grib meteorology netcdf nwp plotting python qgis-plugin scientific-computations scientific-computing simulation urban-planning weather wps wrf

Last synced: 09 May 2024

https://github.com/meteoinfo/MeteoInfo

MeteoInfo: GIS, scientific computation and visualization environment.

gis java jython meteorology scientific scientific-computing

Last synced: 09 May 2024

https://github.com/geoschem/gcpy

Python toolkit for GEOS-Chem. Contains basic plotting scripts, plus the suite of GEOS-Chem benchmarking utilities.

atmospheric-chemistry atmospheric-modelling benchmarking cartopy cloud-computing geos-chem numpy plots plotting-in-python python python-toolkit scientific-computing visualization-tools xarray

Last synced: 09 May 2024

https://github.com/geoschem/geos-chem

GEOS-Chem "Science Codebase" repository. Contains GEOS-Chem science routines, run directory generation scripts, and interface code. This repository is used as a submodule within the GCClassic and GCHP wrappers, as well as in other modeling contexts (external ESMs).

aerosols atmospheric-chemistry atmospheric-chemistry-modeling atmospheric-composition atmospheric-modelling aws bash-script carbon-cycle climate cloud-computing configuration earth-system-modeling fortran greenhouse-gases integration-tests mercury methane particulate-matter run-directory scientific-computing

Last synced: 09 May 2024

https://github.com/tsherwen/AC_tools

Module for working with global/regional Chemical Transport Model (CTM) output and observations

atmospheric-chemistry ctm geos-cf geos-chem geos5 hemco kpp scientific-computing

Last synced: 09 May 2024

https://github.com/VUKOZ-OEL/3d-forest

Visualization, processing and analysis of Lidar point clouds, mainly focused on forest environment. New version of 3D Forest. Process files with terabytes of data. Edit new point attributes. Simple addition of new features by plugins.

3d classification cpp cross-platform data-analysis desktop-application editor forest gui interactive-visualization las laser-scanning lidar opengl plugins point-cloud qt scientific-computing segmentation tree

Last synced: 08 May 2024

https://github.com/casadi/casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

academic-project algorithmic-differentation c-plus-plus code-generation derivatives library mathematics matlab modular nonlinear nonlinear-programming numerical-calculations octave optimal-control optimization parameter-estimation python scientific-computing symbolic-manipulation

Last synced: 08 May 2024

https://github.com/simpeg/simpeg

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

direct-current-resistivity electromagnetics finite-volume geophysics geoscience induced-polarization inverse-problems inversion linear-algebra magnetotellurics modeling modelling multiphysics open-science optimization partial-differential-equations python richards-equation scientific-computing simulation

Last synced: 08 May 2024

https://github.com/goplus/gop

The Go+ programming language is designed for engineering, STEM education, and data science

data-science engineering golang gop goplus low-code programming-language scientific-computing stem stem-education

Last synced: 08 May 2024

https://github.com/Edinburgh-Genome-Foundry/CAB

:oncoming_taxi: The friendly Computational App Boilerplate. Django + Vue.JS + Redis queues + NginX

django nginx scientific-computing user-interface vuejs web-development

Last synced: 07 May 2024

https://github.com/AllenCellModeling/aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

bio-formats dask image-metadata imageio microscopy python scientific-computing scientific-formats xarray

Last synced: 07 May 2024

https://github.com/inducer/meshpy

2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)

gmsh mesh-generation python scientific-computing tetgen triangle wrapper

Last synced: 06 May 2024

https://github.com/InsightSoftwareConsortium/itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

image-analysis imaging insight-toolkit itk jupyter jupyter-widget jupyterlab-extension kitware medical-visualization meshes open-science open-source point-cloud python reproducible-research scientific-computing scientific-visualization

Last synced: 06 May 2024

https://github.com/datoviz/datoviz

⚡ High-performance GPU interactive scientific data visualization with Vulkan

c cpp data-visualization data-viz gpu graphics python rendering scientific-computing scientific-visualization visualization vulkan

Last synced: 05 May 2024

https://github.com/nschloe/awesome-scientific-computing

:sunglasses: Curated list of awesome software for numerical analysis and scientific computing

awesome awesome-list engineering mathematics numerical-analysis physics scientific-computing

Last synced: 05 May 2024

https://github.com/gonum/gonum

Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more

data-analysis go golang graph matrix scientific-computing statistics

Last synced: 05 May 2024

https://github.com/arrayfire/arrayfire

ArrayFire: a general purpose GPU library.

arrayfire c c-plus-plus cpp cuda gpgpu gpu hpc opencl performance scientific-computing

Last synced: 05 May 2024

https://github.com/ddemidov/vexcl

VexCL is a C++ vector expression template library for OpenCL/CUDA/OpenMP

c-plus-plus cpp11 cuda gpgpu opencl scientific-computing

Last synced: 05 May 2024

https://github.com/dswah/pyGAM

[HELP REQUESTED] Generalized Additive Models in Python

data-science gams interpretable-machine-learning machine-learning python scientific-computing

Last synced: 04 May 2024

https://github.com/PMEAL/OpenPNM

A Python package for performing pore network modeling of porous media

modeling-tool network-graph porous-materials porous-media python scientific-computing

Last synced: 04 May 2024

https://github.com/ddemidov/amgcl

C++ library for solving large sparse linear systems with algebraic multigrid method

amg c-plus-plus cpp cuda gpgpu linear-solvers mpi multigrid opencl openmp scientific-computing sparse-linear-systems

Last synced: 02 May 2024

https://github.com/ruby-numo/numo-narray

Ruby/Numo::NArray - New NArray class library

narray numo ruby ruby-numo scientific-computing

Last synced: 01 May 2024

https://github.com/axlelang/axle

Axle Domain Specific Language for Scientific Cloud Computing and Visualization

axle game-theory probabilistic-programming scala scientific-computing visualization

Last synced: 30 Apr 2024

https://github.com/cpmech/gosl

Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.

computational-geometry differential-equations eigenvalues eigenvectors fast-fourier-transform linear-algebra linear-programming mersenne-twister optimization parallel-computations scientific-computing sparse-systems

Last synced: 29 Apr 2024