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Projects in Awesome Lists tagged with linkml

A curated list of projects in awesome lists tagged with linkml .

https://github.com/monarch-initiative/koza

Data transformation framework for LinkML data models

etl knowledge-graph koza linkml monarchinitiative obofoundry ontology

Last synced: 07 May 2026

https://github.com/linkml/schemasheets

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

fair-data linkml metadata schemas shacl shape-languages sheets2linkml shex spreadsheets

Last synced: 05 Jul 2025

https://github.com/incatools/semantic-sql

SQL and SQLite builds of OWL ontologies

linkml oaklib obofoundry ontologies owl relation-graph sparql sql

Last synced: 05 Apr 2025

https://github.com/linkml/linkml-runtime

Runtime support for linkml generated models

conversion hacktoberfest instances linkml linkml-runtime object-model python

Last synced: 30 Apr 2025

https://github.com/cmungall/semantic-llama

A knowledge extraction tool that uses a large language model to extract semantic information from text

ai knowledge-extraction language-models linkml oaklib obofoundry

Last synced: 05 May 2025

https://github.com/linkml/linkml-map

Mapping between LinkML schemas

data-model-mapping etl linkml mapping

Last synced: 01 Aug 2025

https://github.com/chemkg/chemrof

Schema for chemistry ontology classes

chebi chemistry linkml metaclass obo obofoundry ontology owl schema

Last synced: 28 Feb 2026

https://github.com/monarch-initiative/monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

kgx knowledge-graphs linkml linkml-schema monarchinitiative neo4j python semantic-web solr sqlite

Last synced: 01 Aug 2025

https://github.com/linkml/linkml-datalog

Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data. ALPHA.

constraints datalog linkml logic-programming rdf reasoning rule-language rules semantic-web semantics souffle-datalog-language validation

Last synced: 12 Mar 2026

https://github.com/ghga-de/ghga-metadata-schema

Metadata schema for the German Human Genome-Phenome Archive (GHGA)

fega ghga linkml metadata-schema

Last synced: 28 Feb 2026

https://github.com/monarch-initiative/monochrom

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

ai4curation chromosomes etl genomics linkml monarchinitiative obofoundry owl

Last synced: 29 Oct 2025

https://github.com/linkml/prefixmaps

Semantic prefix map registry

bioregistry linkml obofoundry prefixmaps

Last synced: 23 Apr 2025

https://github.com/alliance-genome/agr_curation_schema

Schema repository for the Alliance of Genome Resources persistent data store

alliance-curation alliance-of-genome-resources linkml

Last synced: 05 May 2026

https://github.com/linkml/linkml-registry

Registry of schemas that use LinkML

linkml registry schema-registry schemas

Last synced: 23 Apr 2025

https://github.com/linkml/linkml-owl

Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)

design-patterns json2owl linkml metaclasses ontologies ontology-design-patterns ontology-generation ontology-mapping owl templates tsv2owl yaml2owl

Last synced: 23 Apr 2025

https://github.com/incatools/kgcl

Datamodel for KGCL (Knowledge Graph Change Language)

kgcl linkml ontology-changes ontology-diffs rdf semantic-web

Last synced: 12 Oct 2025

https://github.com/cmungall/json-flattener

Python library for denormalizing nested dicts or json objects to tables and back

dataframes denormalization json linkml pandas yaml

Last synced: 20 Jul 2025

https://github.com/linkml/valuesets

Common value sets (enums) for science, biomedicine, computing, and other areas

ai4curation fair-data linkml monarchinitiative semantics standards value-sets

Last synced: 05 Jan 2026

https://github.com/linkml/linkml-reference-validator

Validate that supporting text quotes in your data actually appear in their cited references

agentic-ai ai-guardrails ai4curation linkml monarchinitiative pubmed

Last synced: 27 Jan 2026

https://github.com/linkml/linkml-runtime.js

An implementation of the linkml-runtime in javascript ALPHA VERSION

data-harmonizer linkml

Last synced: 23 Apr 2025

https://github.com/linkml/semantic-dsl

Easy Domain Specific Languages for your Schemas

grammar-generator grammars lark linkml python rdf semweb

Last synced: 23 Apr 2025

https://github.com/linkml/linkml-arrays

Support for loading and dumping N-dimensional arrays in LinkML.

arrays hdmf linked-data linkml multidimensional-arrays numpy zarr

Last synced: 23 Apr 2025

https://github.com/capsulecorplab/patternbuffer

Roassal bindings for file-based linked data models

filesystem linkml local-first pharo rdf rdflib smalltalk sparql

Last synced: 17 Jun 2025

https://github.com/linkml/linkml-common

ALPHA common modeling patterns

common-data-model linkml schema-org

Last synced: 23 Apr 2025

https://github.com/linkml/linkml-term-validator

Validating LinkML schemas and datasets that depend on external terms

linkml obofoundry ontologies validation

Last synced: 01 Apr 2026

https://github.com/linkml/linkml-solr

Simple wrapper for using Solr with LinkML schemas

linkml metadata solr

Last synced: 17 Jul 2025

https://github.com/berkeleybop/kgviz-model

Schema for configurations / stylesheets for visualizing ontology and KGs

graphviz javascript kgs linkml node obographs obographviz ontobio ontology ontology-visualization stylesheet visualization

Last synced: 07 May 2026

https://github.com/linkml/linkml-sparql

Maps LinkML queries to SPARQL and back (ALPHA)

linked-data linkml ontology orm queries rdf rdflib semantic-web sparql

Last synced: 18 May 2026

https://github.com/linkml/linkml-schemaorg

Automated linkml rendering of schema.org

linkml schema-org

Last synced: 24 Feb 2025

https://github.com/microbiomedata/refscan

Command-line program that scans NMDC database for referential integrity violations

linkml mongodb referential-integrity

Last synced: 29 Oct 2025

https://github.com/cmdoret/mtg_ontology

An ontology describing cards in Magic The Gathering.

linkml mtg ontology rdf

Last synced: 15 Jun 2025

https://github.com/linkml/linkml-project-copier

A copier template for your next LinkML project

copier linkml schema template

Last synced: 06 Sep 2025

https://github.com/vemonet/ontogpt-api

⛏️ An API to extract informations from text using OntoGPT

gpt-3 linkml ontology

Last synced: 22 Aug 2025

https://github.com/dalito/linkml-project-copier

A copier template for your next LinkML project

copier linkml schema template

Last synced: 15 Apr 2025

https://github.com/linkml/linkml.github.io

Website/splash page for main LinkML project

data-modeling jekyll linkml splash-page website

Last synced: 20 Oct 2025

https://github.com/linkml/linkml-prov

LinkML rendering of PROV

linkml prov provenance semantic-web standards

Last synced: 17 Oct 2025

https://github.com/jbris/linkml-pydantic-polyfactory

Testing LinkML for generating Pydantic data models alongside polyfactory for mock data.

json-schema json-schemas linkml linkml-model-template linkml-schema mock mocking polyfactory pydantic pydantic-models pydantic-settings pydantic-v2

Last synced: 14 Apr 2026

https://github.com/linkml/linkml-renderer

Rendering of instance data as HTML, Markdown, Mermaid

html instance-graphs linkml markdown mermaid python templates

Last synced: 07 Dec 2025

https://github.com/cmungall/owl-schema

schema for OWL in LinkML

linkml metamodeling owl owl-schema semweb

Last synced: 04 Apr 2025

https://github.com/biolink/resource-ingest-guide-schema

A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.

etl linkml model schema

Last synced: 17 Aug 2025

https://github.com/saved-models/ext

Generated documentation for SAVED data model. Due to the interaction between LinkML, JSON-LD contexts and yet-to-be-generated RDF (turtle/n-triples), this is manually compiled.

linkml rdf scotland semantic-web

Last synced: 24 Jan 2026

https://github.com/dalito/dcat-in-linkml

An experiment to derive LinkML models for DCAT2 and DCAT3 automatically

dcat dcat-ap linkml

Last synced: 10 Oct 2025

https://github.com/cmungall/human-cell-atlas

EXPERIMENTAL translation of HCA json schema to LinkML

alpha cell-atlas for-exploratory-purposes-only linkml metadata single-cell

Last synced: 01 Aug 2025

https://github.com/sujaypatil96/ga4gh-va-schema

Data model for variant annotation in the GA4GH consortium.

ga4gh linkml schema

Last synced: 04 Apr 2025

https://github.com/sujaypatil96/ga4gh-va

LinkML schema for GA4GH variant annotation

ga4gh linkml schema

Last synced: 19 Jan 2026

https://github.com/cmungall/all-about-me

Metadata for the people

foaf linkml

Last synced: 19 Aug 2025

https://github.com/cmungall/obo-metadata

EXPERIMENTAL obo metadata repo

linkml metadata obofoundry

Last synced: 10 Jun 2025

https://github.com/saved-models/data-model

SAVED data-model and project documentation

linkml rdf scotland semantic-web

Last synced: 20 Feb 2026