Projects in Awesome Lists tagged with phenopackets
A curated list of projects in awesome lists tagged with phenopackets .
https://github.com/ga4gh/phenopacket-schema
Repository for the GA4GH phenopacket schema
ehr-phenotyping ga4gh monarchinitiative phenopackets phenotypes protobuf schema
Last synced: 23 Jan 2026
https://github.com/monarch-initiative/phenopacket-store
Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
ga4gh hpo monarchinitiative phenopackets
Last synced: 04 Oct 2025
https://github.com/P2GX/gpsea
A Python library for discovery of genotype-phenotype associations
Last synced: 29 Oct 2025
https://github.com/cmungall/linkml-phenopackets
EXPERIMENTAL rendering of phenopackets in linkml
human-phenotype-ontology linkml metadata monarchinitiative phenopackets phenotypes rdf semweb
Last synced: 30 Aug 2025
https://github.com/monarch-initiative/pheval.llm
Analysis of LLMs for Clinical Observations
biomedical-ontologies clinical-diagnosis hpo large-language-models monarchinitiative phenopackets rare-diseases
Last synced: 06 Jul 2025
https://github.com/phenopackets/phenopacket-reference-implementation
Reference java implementation for phenopackets
disease json monarchinitiative phenopackets phenotypes pxf yaml
Last synced: 14 Jan 2026
https://github.com/cnag-biomedical-informatics/convert-pheno-ui
The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data
beacon-friendly-format cdisc convert omop-cdm pheno-clinical phenopackets
Last synced: 09 Apr 2025
https://github.com/P2GX/phenopacket2prompt
GA4GH Phenopacket to LLM prompt
deep-phenotyping human-phenotype-ontology large-language-models monarchinitiative phenopackets prompt-engineering
Last synced: 29 Oct 2025
https://github.com/pnrobinson/phenotools
Validation of phenopackets in C++
cpp17 ga4gh monarchinitiative phenopackets protobuf
Last synced: 05 Oct 2025
https://github.com/monarch-initiative/phenotype2phenopacket
Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.
monarchinitiative phenopackets phenotypes
Last synced: 29 Oct 2025
https://github.com/floherzler/sams-phenopackets-thesis
Importing and exporting Phenopackets from and to the SAMS application. Resources used in my BSc Thesis @ FU Berlin.
Last synced: 02 Feb 2026
