Projects in Awesome Lists by CNAG-Biomedical-Informatics
A curated list of projects in awesome lists by CNAG-Biomedical-Informatics .
https://github.com/CNAG-Biomedical-Informatics/convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
beacon beacon-v2 bff biomedical-informatics cdisc cdisc-odm cnag convert convert-pheno csv ehr ehr-data ehr-phenotyping health-data omop omop-cdm phenopacket phenopackets-v2 pxf redcap
Last synced: 21 Jan 2026
https://github.com/cnag-biomedical-informatics/convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
beacon beacon-v2 bff biomedical-informatics cdisc cdisc-odm cnag convert convert-pheno csv ehr ehr-data ehr-phenotyping health-data omop omop-cdm phenopacket phenopackets-v2 pxf redcap
Last synced: 05 Apr 2025
https://github.com/cnag-biomedical-informatics/convert-pheno-ui
The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data
beacon-friendly-format cdisc convert omop-cdm pheno-clinical phenopackets
Last synced: 09 Apr 2025
https://github.com/cnag-biomedical-informatics/beacon2-cbi-tools
Beacon v2 - CNAG Biomedical Informatics - Tools (Data ingestion tools)
23andme beacon beacon-friendly-format beacon-v2 beacon2-reference-implementation beacon2-ri beacon2-ri-tools bff bff-portal browser cnag data-exchange json microarray mongodb perl python snp vcf
Last synced: 04 Apr 2026
https://github.com/cnag-biomedical-informatics/pheno-ranker
Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.
beacon-v2 bff csv data-exploration json phenopackets-v2 pxf semantic-similarity semantic-similarity-measures
Last synced: 29 Apr 2026
https://github.com/cnag-biomedical-informatics/pheno-ranker-ui
The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2
beacon-v2 clinical-data data-exploration json phenopackets-v2 r semantic-similarity semantic-similarity-measures shiny
Last synced: 13 Oct 2025
https://github.com/cnag-biomedical-informatics/omicsdm-documentation
OmicsDM documentation
Last synced: 28 Feb 2026
https://github.com/cnag-biomedical-informatics/pheno-ranker-app
A standalone desktop application for phenotype ranking using the Pheno-Ranker tool, built with Python and CustomTkinter.
Last synced: 02 Apr 2025
https://github.com/cnag-biomedical-informatics/.github
Repository for modifying the organization's profile page
Last synced: 19 Mar 2026