Projects in Awesome Lists tagged with phenotypes

https://github.com/monarch-initiative/biolink-api

API for linked biological knowledge

api bioinformatics gene model-organisms ontologies phenotypes python swagger

Last synced: 14 Feb 2025

https://github.com/pato-ontology/pato

PATO - the Phenotype And Trait Ontology

obo obofoundry ontology phenotypes qualities quantities semantic-web standards trait-ontology units

Last synced: 03 Apr 2025

https://github.com/monarch-initiative/phenol

phenol: Phenotype ontology library

genomics human-phenotype-ontology java mammalian-phenotype-ontology monarchinitiative ontologies phenomics phenotypes

Last synced: 14 Feb 2025

https://github.com/drseb/hpo-translations

Internationalisation of the HPO content

hpo hpo-translations language obofoundry ontology phenomics phenotype-ontologies phenotypes phenotyping semantic-web translation

Last synced: 09 Apr 2025

https://github.com/monarch-initiative/phenogrid

The phenogrid widget

data-visualization gene html javascript monarchinitiative phenotypes visualize-data widget

Last synced: 14 Feb 2025

https://github.com/cmungall/linkml-phenopackets

EXPERIMENTAL rendering of phenopackets in linkml

human-phenotype-ontology linkml metadata monarchinitiative phenopackets phenotypes rdf semweb

Last synced: 08 May 2025

https://github.com/drseb/hpo-archive

HPO archive of the ontology and annotations

annotations archive hpo hpo-archive ontology phenomics phenotype-ontologies phenotypes phenotyping

Last synced: 09 Apr 2025

https://github.com/nathadriele/biophenotype-rag

This project implements a RAG (Retrieval-Augmented Generation) application to answer questions about phenotypes using biological and genomic data. The pipeline integrates information retrieval with response generation via language models (LLM), facilitating accurate analysis of phenotypic data.

anaconda genomic-data-analysis grafana groq jupyter-notebook langchain llm monitoring phenotypes pinecone pipeline-ingestion postgresql prefect pytest rag sql streamlit

Last synced: 07 Apr 2025

https://github.com/drseb/boqa

Bayesian ontology querying from Bauer et al.

bayesian-inference hpo obofoundry phenotype phenotype-ontologies phenotypes phenotyping similarity

Last synced: 14 Feb 2025

https://github.com/zietzm/phenotype_standardization

https://github.com/zietzm/phenotype_standardization/wiki

medical-informatics pharmacovigilance phenotypes

Last synced: 02 Mar 2025

https://github.com/drseb/phenopposites

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

ontologies ontology phenomics phenotype phenotype-ontologies phenotypes phenotyping semantic-web semantics similarity-measures

Last synced: 09 Apr 2025

https://github.com/monarch-initiative/phenotype2phenopacket

Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

monarchinitiative phenopackets phenotypes

Last synced: 14 Feb 2025