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Projects in Awesome Lists tagged with ome

A curated list of projects in awesome lists tagged with ome .

https://github.com/ome/ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

ngff ome ome-zarr zarr

Last synced: 09 May 2025

https://github.com/labsyspharm/minerva-story

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

immunofluorescence microscopy minerva ome

Last synced: 07 May 2025

https://github.com/tlambert03/ome-types

native Python dataclasses for the OME data model

metadata microscopy ome

Last synced: 04 Apr 2025

https://github.com/manics/ansible-role-k8s-heketi-gluster

Setup a GlusterFS cluster with Heketi REST API on Kubernetes

ansible glusterfs heketi idr kubernetes ome storage

Last synced: 17 Mar 2025

https://github.com/biologytools/bio

A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

bio-formats biology csv imagej microscopy ome omero roi whole-slide-image

Last synced: 03 Dec 2024

https://github.com/biologytools/biocore

Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

bio-formats biology csv imagej imagej-roi microscopy ome roi whole-slide-image

Last synced: 03 Dec 2024

https://github.com/fabriziomusacchio/zarr_tests

Python code that I used in my blog posts on the Zarr file format.

bioimage-analysis bioimaging microscopy-data microscopy-images ome ome-zarr omero python zarr

Last synced: 02 Mar 2025

https://github.com/imcf/jython-ome-model

:coffee: :snake: :microscope: :bookmark: :bookmark_tabs: A mavenized package of the Open Microscopy Environment "ome-model" Python module to be used in ImageJ2.

imagej imagej2 jython metadata ome ome-metadata ome-model python

Last synced: 26 Feb 2025

https://github.com/tlambert03/bioformats_jar

(deprecated) meta-package to import bioformats_jar from scyjava

bioformats ome python

Last synced: 25 Dec 2024

https://github.com/manics/ansible-role-docker-registry

Setup a Docker Registry, managed with Systemd

ansible docker ome

Last synced: 05 Apr 2025

https://github.com/blueslie2012/ove

ove: A simple and lightweight tool for creating and managing virtual environments in Python projects. It provides an easy way to isolate dependencies and maintain project-specific configurations without affecting the system-wide setup.

angular broadcasting electron hls ios lldash ome ovenmediaengine overlay streaming streaming-server subdomain typescript vuex

Last synced: 03 Mar 2025