Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with peptide-identification
A curated list of projects in awesome lists tagged with peptide-identification .
https://github.com/ursgal/ursgal
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
mass-spectrometry ms-data mzml omics peptide-identification proteomics proteomics-data python
Last synced: 12 Nov 2024
https://github.com/cpanse/protviz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
cran fun mass-spectrometry peptide-identification proteomics quantification rstats visualization
Last synced: 15 Dec 2024
https://github.com/pgarrett-scripps/peptacular
A spectacularly simple package for working with peptide sequences.
bioinformatics mass-spectrometry peptide-identification peptide-sequences peptides protein proteomics python
Last synced: 05 Dec 2024
https://github.com/biogenies/cancergram
Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
anticancer-peptides bioinformatics k-mer n-gram peptide-identification r-package random-forests
Last synced: 19 Nov 2024
https://github.com/pgarrett-scripps/proteincleaverstreamlitapp
Protein Cleaver is a versatile tool for protein analysis and digestion.
digestion fasta mass-spectrometry peptide peptide-identification peptide-sequences peptides protein protein-sequences proteomics proteomics-data-analysis streamlit streamlit-cloud
Last synced: 05 Dec 2024
https://github.com/pgarrett-scripps/peptidefragmenterstreamlitapp
A peptide fragment ion calculator made with streamlit
fragment fragmentation-calculator mass-spectrometry peptide-identification peptide-modification peptide-sequences peptides protein proteomics streamlit
Last synced: 05 Dec 2024
https://github.com/yufongpeng/peptideseq.jl
Predict and match digested peptides sequences, their mass m/z and MS/MS spectra with chemical derivatization or post-translational modification.
lc-msms peptide-identification peptide-sequences proteomics
Last synced: 24 Dec 2024
https://github.com/astrabert/predgenesgetpepts
PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
beginner-friendly bioinformatics blastp gene-calling gene-prediction peptide-identification
Last synced: 15 Nov 2024
https://github.com/biogenies/kmerfilters
Tools for filtering k-mer data
genomics k-mer n-gram peptide-identification proteomics
Last synced: 19 Nov 2024
https://github.com/ramy-badr-ahmed/bioinformatics-misc-scripts
Miscellaneous Scripts in Bioinformatics
clinical-data-warehouse clinical-trial-management-system clinical-trials clinical-trials-retrieval database-design database-schema dna-processing dna-sequences fasta-sequences gz-compression mass-spectrometry-data md5-python mfg-test mgf peptide-identification peptide-sequences sequence-spectrum sql-cte sqlite
Last synced: 20 Dec 2024
