Projects in Awesome Lists tagged with k-mer
A curated list of projects in awesome lists tagged with k-mer .
https://github.com/steineggerlab/metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
bioinformatics k-mer metagenomics taxonomic-classification taxonomy
Last synced: 09 Apr 2025
https://github.com/shenwei356/unikmer
A versatile toolkit for k-mers with taxonomic information
difference golang intersection k-mer kmer set unik union unique
Last synced: 19 Apr 2025
https://github.com/seqan/raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
binning bloom-filter filter k-mer minimizer set-membership threshold
Last synced: 09 Apr 2025
https://github.com/johnlees/seer
sequence element (kmer) enrichment analysis
Last synced: 02 Apr 2025
https://github.com/suchapalaver/krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
beginner-friendly bioinformatics bioinformatics-tool bitpacking bytes clap dashmap genomics insta k-mer k-mer-counting k-mers kmer kmer-counting kmers needletail parallelization rayon rust rust-bio
Last synced: 21 Mar 2025
https://github.com/slowikj/seqr
fast and comprehensive k-mer counting package
bioinformatics bioinformatics-tool dna-processing feature-engineering feature-extraction genomics hashing hashing-algorithms k-mer k-mer-counting kmer kmer-counting kmer-frequency-count kmers ngram ngrams protein-sequences rcpp rcppparallel rpackage
Last synced: 15 May 2025
https://github.com/tobiasrausch/rdxon
Reference-free FASTQ filter for rare germline and somatic variants
cancer-genomics k-mer pan-genome rare-disease reference-free sequencing variant-calling
Last synced: 13 Apr 2025
https://github.com/biogenies/cancergram
Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
anticancer-peptides bioinformatics k-mer n-gram peptide-identification r-package random-forests
Last synced: 15 May 2025
https://github.com/mhyfritz/k-mers
Enumerate k-mers of a given string.
dna genomics javascript k-mer nodejs string
Last synced: 18 Mar 2025
https://github.com/seqan/minions
Comparison between different methods to simplify sequence data
k-mer minimizer set-membership
Last synced: 13 Jan 2025
https://github.com/rdmpage/dimacs-dnabarcode-challenge
Files from DIMACS 2007 DNA barcoding challenge
alignment-free dna dna-barcoding k-mer
Last synced: 10 Mar 2025
https://github.com/biogenies/kmerfilters
Tools for filtering k-mer data
genomics k-mer n-gram peptide-identification proteomics
Last synced: 13 Mar 2025
https://github.com/cmdoret/strangerseq
Generate DNA sequences minimizing microhomology
Last synced: 16 May 2025
