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Projects in Awesome Lists tagged with kmer-counting
A curated list of projects in awesome lists tagged with kmer-counting .
https://github.com/suchapalaver/krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
beginner-friendly bioinformatics bioinformatics-tool bitpacking bytes clap dashmap genomics insta k-mer k-mer-counting k-mers kmer kmer-counting kmers needletail parallelization rayon rust rust-bio
Last synced: 28 Oct 2024
https://github.com/alexpreynolds/kmer-counter
Count kmers with a more efficient (faster) hash table
bioinformatics cpp14 genomics hash-map kmer kmer-counting
Last synced: 07 Nov 2024
https://github.com/suchapalaver/fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
fasta-format fasta-sequences kmer kmer-counting kmer-frequency-count kmer-length kmers
Last synced: 12 Oct 2024
https://github.com/alexpreynolds/kmer-counter-unordmap
Count canonical kmers with STL unordered_map
bioinformatics cpp hash-tables kmer kmer-counting kmer-frequency-count
Last synced: 07 Nov 2024
https://github.com/alexpreynolds/kmer-counter-boost
Count canonical kmers with Boost C++ `boost::unordered_map` hash table
bazel bazel-examples bioinformatics boost cpp hash-tables kmer kmer-counting kmer-frequency-count
Last synced: 07 Nov 2024
https://github.com/alexpreynolds/kmer-counter-abseil
Count canonical kmers with Abseil C++ `absl::flat_hash_map`
abseil bazel bazel-examples bioinformatics cpp hash-tables kmer kmer-counting kmer-frequency-count
Last synced: 07 Nov 2024
https://github.com/alexpreynolds/kmer-counter-emilib
Count canonical kmers with Emil Ernerfeldt's emilib::HashMap
bioinformatics cpp hash-tables kmer kmer-counting kmer-frequency-count
Last synced: 07 Nov 2024
https://github.com/alexpreynolds/kmer-counter-sparse
Count canonical kmers with Google sparse_hash_map
bioinformatics cpp hash-tables kmer kmer-counting kmer-frequency-count
Last synced: 07 Nov 2024
https://github.com/alexpreynolds/kmer-counter-ska
Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
bioinformatics cpp hash-tables kmer kmer-counting kmer-frequency-count
Last synced: 07 Nov 2024