Projects in Awesome Lists tagged with kmers
A curated list of projects in awesome lists tagged with kmers .
https://github.com/suchapalaver/krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
beginner-friendly bioinformatics bioinformatics-tool bitpacking bytes clap dashmap genomics insta k-mer k-mer-counting k-mers kmer kmer-counting kmers needletail parallelization rayon rust rust-bio
Last synced: 21 Mar 2025
https://github.com/slowikj/seqr
fast and comprehensive k-mer counting package
bioinformatics bioinformatics-tool dna-processing feature-engineering feature-extraction genomics hashing hashing-algorithms k-mer k-mer-counting kmer kmer-counting kmer-frequency-count kmers ngram ngrams protein-sequences rcpp rcppparallel rpackage
Last synced: 15 May 2025
https://github.com/biojulia/kmeranalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
biojulia kmer kmer-composition kmer-counting kmer-distribution kmer-frequency-count kmer-spectra kmers
Last synced: 15 Apr 2025
https://github.com/suchapalaver/fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
fasta-format fasta-sequences kmer kmer-counting kmer-frequency-count kmer-length kmers
Last synced: 09 Apr 2025
https://github.com/ibchgenomic/sequenceprofiler
rust graph and sequence profiler for reads and genomes
bioinformatics biological-data-analysis biological-sequences genome-analysis graph-algorithms graphs kmers
Last synced: 30 Mar 2025
https://github.com/bissim/bgp-d2
This is our implementation for D2 distance algorithm for k-mers.
bioinformatics kmer kmer-distribution kmer-frequency-count kmers
Last synced: 05 Mar 2025
https://github.com/sciencegenome/graph-kmer
rust graph cluster making suffix arrays easier
bioinformatics biological-data-analysis biological-sequences genome-analysis graph-algorithms graphs kmers
Last synced: 16 Feb 2025
