Projects in Awesome Lists tagged with dna-processing

https://github.com/MAGICS-LAB/DNABERT_2

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

covid dataset dna dna-processing dna-training genome genome-analysis language-model promoter promoter-analysis promoters splice splice-site transcription-factor-binding transcription-factor-binding-site transcription-factors

Last synced: 09 Oct 2025

https://github.com/liberu-genealogy/php-dna

DNA processing and manipulating for PHP 8.3

dna dna-processing laravel laravel10 php php8

Last synced: 11 Apr 2025

https://github.com/slowikj/seqr

fast and comprehensive k-mer counting package

bioinformatics bioinformatics-tool dna-processing feature-engineering feature-extraction genomics hashing hashing-algorithms k-mer k-mer-counting kmer kmer-counting kmer-frequency-count kmers ngram ngrams protein-sequences rcpp rcppparallel rpackage

Last synced: 15 May 2025

https://github.com/gagniuc/sequence-logo-relative-style

Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.

dna dna-processing html-css-javascript html5 html5-canvas javascript js motif proteomics rna-sequences sequence-logo

Last synced: 14 Aug 2025

https://github.com/cgdsoftware/php-dna

A library for reading and writing DNA test kit files in PHP.

dna dna-processing library php php-library php8

Last synced: 01 Mar 2025

https://github.com/cgdsoftware/laravel-dna

Package to parse DNA kit files, and import them into Laravel

dna dna-processing dna-sequencing php php-library php8

Last synced: 01 Mar 2025

https://github.com/gagniuc/objective-digital-stains

This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.

dna-processing dna-sequences genetics genomics html5-canvas information javascript js objective-digital-stains ods visualization

Last synced: 19 Oct 2025

https://github.com/gagniuc/simple-js-implementation-of-objective-digital-stains

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

algorithm bioinformatics dna dna-processing dna-sequences genetics genomics javascript js objective-digital-stain ods rna rna-sequence visualization

Last synced: 02 Dec 2025

https://github.com/gagniuc/objective-digital-stains-in-php

This code generates Objective Digital Stains (ODSs) and it is implemented in PHP. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

dna dna-processing dna-sequences functions objective-digital-stains ods php php7 rna