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Projects in Awesome Lists tagged with dna-methylation
A curated list of projects in awesome lists tagged with dna-methylation .
https://github.com/crazyhottommy/dna-methylation-analysis
DNA methylation analysis notes from Ming Tang
Last synced: 13 Nov 2024
https://github.com/dohlee/metheor
:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
bioinformatics computational-biology computational-epigenomics dna-methylation epigenomics rust
Last synced: 11 Nov 2024
https://github.com/lkremer/scbs
Python package with CLI for downstream analysis of single cell methylation data.
dna-methylation dna-methylation-data methylation single-cell single-cell-methylation single-cell-rna-seq
Last synced: 18 Nov 2024
https://github.com/databio/cocoa
Annotating epigenetic variation among samples with region sets in R
Last synced: 15 Nov 2024
https://github.com/lieberinstitute/alzheimers_dnam
Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
450k alzheimers-disease dna-methylation epigenomics
Last synced: 30 Nov 2024
https://github.com/supermaxiste/arpeggio
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
allopolyploid automation bisulfite-sequencing dna-methylation epigenetics plants reproducibility snakemake whole-genome-sequencing workflow
Last synced: 27 Oct 2024
https://github.com/lieberinstitute/brain-epigenomics
dna-methylation rna-seq rstats
Last synced: 30 Nov 2024
https://github.com/navpreetdevpuri/dnac
DNAc is a programming language for DNAs.
dna dna-assembly dna-methylation dna-processing dna-sequence genetic-algorithm genetic-analysis genetic-programming genetic-programming-algorithm genetic-variants genetics
Last synced: 07 Dec 2024
https://github.com/stephaniehicks/flowsorted.blood.wgbs.blueprint
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
bioconductor bioconductor-package bisulfite-sequencing blood data dna-methylation flowsort wgbs
Last synced: 11 Nov 2024
https://github.com/dohlee/idat2beta
Small minfi wrapper to convert IDAT files to beta values.
bioinformatics dna-methylation methylation-analysis
Last synced: 11 Nov 2024
https://github.com/andrewdavidsmith/transferase
Transferase: a system for retrieving methylomes from methbase
bisulfite bisulfite-sequencing dna-methylation epigenetics epigenomics methyl-seq methylation methylation-analysis methylome wgbs
Last synced: 20 Dec 2024
https://github.com/cxli233/gamete-small-rna
R Markdown files for analyses of rice small RNA, gene expression and DNA methylation
dna-methylation gene-expression plant-development r small-rna
Last synced: 15 Nov 2024
https://github.com/andrewdavidsmith/mxe
Methylome transfer engine (mxe)
bisulfite bisulfite-sequencing dna-methylation epigenetics epigenomics methyl-seq methylation methylation-analysis methylome wgbs
Last synced: 29 Nov 2024