Projects in Awesome Lists by andrewdavidsmith
A curated list of projects in awesome lists by andrewdavidsmith .
https://github.com/andrewdavidsmith/adssrc
A subset of the programs I use in my own data analysis.
Last synced: 14 Apr 2025
https://github.com/andrewdavidsmith/transferase
The transferase system for retrieving methylome data from methbase
bisulfite bisulfite-sequencing dna-methylation epigenetics epigenomics methyl-seq methylation methylation-analysis methylome wgbs
Last synced: 06 Apr 2025
https://github.com/andrewdavidsmith/mlevels
Implementation of the levels command from dnmtools in rust
Last synced: 26 Mar 2025
https://github.com/andrewdavidsmith/mcounts
Implementation of count from dnmtools in rust
Last synced: 26 Mar 2025
https://github.com/andrewdavidsmith/msym
Make sites symmetric CpGs in counts format DNA methylation levels
Last synced: 26 Mar 2025
https://github.com/andrewdavidsmith/radmeth-demo-simulated-data
Simulated data that was used to generate part of the documentation for radmeth
Last synced: 26 Mar 2025
https://github.com/andrewdavidsmith/qbio578a-examples
I'm using this repo to share some code I use for demonstrating algorithms
Last synced: 26 Mar 2025
https://github.com/andrewdavidsmith/adapto-rs
Remove adaptors from short-read bisulfite sequencing data (coded in rust)
sequence-alignment sequencer sequencing sequencing-adapters sequencing-data sequencing-data-analysis sequencing-reads
Last synced: 26 Mar 2025
https://github.com/andrewdavidsmith/mxe
Methylome transfer engine (mxe)
bisulfite bisulfite-sequencing dna-methylation epigenetics epigenomics methyl-seq methylation methylation-analysis methylome wgbs
Last synced: 29 Nov 2024
https://github.com/andrewdavidsmith/transferase-test-data-small
Small data sets for integration tests for the transferase back-end commands
Last synced: 21 Feb 2025
https://github.com/andrewdavidsmith/asio
Asio C++ Library (copied to reorganize for use in transferase)
Last synced: 09 Mar 2025