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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with rna
A curated list of projects in awesome lists tagged with rna .
https://github.com/a-r-j/graphein
Protein Graph Library
bioinformatics computational-biology deep-learning dgl drug-discovery gene-regulatory-networks geometric-deep-learning graph-neural-networks interactome interactomics ppi-networks protein protein-data-bank protein-design protein-structure python pytorch pytorch-geometric rna structural-biology
Last synced: 02 Aug 2024
https://github.com/nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus
Last synced: 06 Aug 2024
https://github.com/fjossinet/rnartist
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
bioinformatics java javafx-application kotlin rna rna-secondary-structure rna-structure
Last synced: 29 Sep 2024
https://github.com/mmagnus/rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
bioinformatics pdb python rna rna-pdb rna-puzzle rna-structure rna-tools rosetta simrna
Last synced: 04 Aug 2024
https://github.com/GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
genomics machine-learning modification nanopore nanopore-sequencing python rna rna-modifications rna-seq transcriptomics
Last synced: 02 Aug 2024
https://github.com/adnaniazi/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
bioinformatics cdna nanopore r rna
Last synced: 02 Aug 2024
https://github.com/fomightez/sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
bioinformatics bioinformatics-analysis bioinformatics-scripts dna genomics list lists protein-sequences python rna
Last synced: 01 Aug 2024
https://github.com/biocorecrg/MOP2
Master of Pores 2
cdna docker nanopore nextflow pipeline rna rna-seq singularity
Last synced: 02 Aug 2024
https://github.com/marcom/viennarna.jl
Julia interface to ViennaRNA for RNA structure prediction and analysis
julia rna rna-folding rna-secondary-structure-prediction rna-structure-prediction
Last synced: 27 Sep 2024
https://github.com/BIMSBbioinfo/RCAS
R package for the RNA Centric Annotation System (RCAS)
bioconductor cage coverage-distribution go interactive-plots modification motif-discovery msigdb par-clip protein-rna-interactions reporting rna
Last synced: 02 Aug 2024
https://github.com/unkindpartition/bamcc
bamcc — split SAM/BAM files into connected components
alignment bioinformatics biology dna rna rna-seq
Last synced: 02 Oct 2024
https://github.com/uea-geral/rna-mlp-experiments-exercise
🧠Training a MLP neural network using Jupyter Notebook and Python.
Last synced: 27 Sep 2024
https://github.com/youssefayachii/hicdataanalysis
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the interaction of the OAS3 Epromoter with its target promoters OAS1 and OAS2, before and after IFN alpha stress stimulation and then to figure out the changes of the 3D chromatin organization upon this stress stimulation.
3c chromatin genetics hic oas oas3 rna rna-seq
Last synced: 30 Sep 2024
https://github.com/mnsmar/rnadna
Convert sequence representation RNA - DNA for FASTA/Q
bioinformatics dna fasta fastq go rna
Last synced: 02 Aug 2024
https://github.com/vtlim/mismatch
Web app to find mismatched base pairs between hybridized DNA sequences.
css dna dna-sequences flask heroku html javascript materializecss mismatch nucleobase python rna
Last synced: 01 Oct 2024
