Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by a-r-j
A curated list of projects in awesome lists by a-r-j .
https://github.com/a-r-j/graphein
Protein Graph Library
bioinformatics computational-biology deep-learning dgl drug-discovery gene-regulatory-networks geometric-deep-learning graph-neural-networks interactome interactomics ppi-networks protein protein-data-bank protein-design protein-structure python pytorch pytorch-geometric rna structural-biology
Last synced: 30 Oct 2024
https://github.com/a-r-j/proteinworkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
benchmark dataset deep-learning lightning pretraining protein protein-structure pytorch
Last synced: 01 Nov 2024
https://github.com/a-r-j/cpdb
Cython implementation of PDB -> DataFrame parsing
bioinformatics deep-learning machine-learning pdb pdb-files pdb-parser protein protein-structure structural-biology
Last synced: 01 Nov 2024
https://github.com/a-r-j/graphtype
Type hinting for networkx Graphs
data-science graph graph-algorithms graph-theory network-analysis networkx pydata python scientific-computing typehinting typehints
Last synced: 27 Oct 2024
https://github.com/a-r-j/drugtranslator
R package for translating between drug identifiers using the Chemical Translation Service (CTS)
biomedical-data-science biomedical-informatics chemical chemical-identifiers chemical-translation-service cheminformatics chemistry drug-development drug-discovery drug-repurposing identifiers r r-package
Last synced: 01 Nov 2024
https://github.com/a-r-j/npview
CLI tools for quickly inspecting CSV/TSV & NumPy (.npy) array files
cli csv data-analysis inspector npy numpy python tsv
Last synced: 11 Oct 2024
https://github.com/a-r-j/tb-resources
List of online databases and resources for Mycobacterium Tuberculosis
computational-biology curated drug-discovery genomics genomics-data genomics-data-sets integration list mycobacterium mycobacterium-tuberculosis omics proteomics proteomics-data proteomics-data-integration proteomics-datasets transcriptomics transcriptomics-data transcriptomics-data-integration transcriptomics-datasets tuberculosis
Last synced: 01 Nov 2024
https://github.com/a-r-j/dotfiles
general scripts/set ups I use across multiple machines
Last synced: 01 Nov 2024
https://github.com/a-r-j/peptirdle
A clone of the popular game Wordle made using React, Typescript, and Tailwind
Last synced: 01 Nov 2024