Projects in Awesome Lists by vtlim
A curated list of projects in awesome lists by vtlim .
https://github.com/vtlim/permeability
Adaptive biasing force (ABF) & umbrella sampling (US) simulations to calculate membrane permeability
Last synced: 15 Apr 2025
https://github.com/vtlim/patfam
Web app to determine whether patent applications from different jurisdictions (USPTO, EPO, WIPO, etc.) are of the same family.
css d3js epo html javascript materializecss patent-applications patent-offices python selenium uspto web-scraping wipo
Last synced: 07 Jan 2026
https://github.com/vtlim/plot_potential
Plot individual potential functions that comprise force fields. Ideal for presentations. Includes energy terms for bonds (harmonic), angles (harmonic), proper torsion (periodic cosine), improper torsion (harmonic), van der Waals (Lennard-Jones), electrostatics (Coulomb), and the Morse potential.
computational-chemistry cosine coulomb-interactions energy-functions forcefield harmonic lennard-jones matplotlib molecular-dynamics molecular-modeling molecular-simulation morse potential presentation-materials vdw
Last synced: 10 Oct 2025
https://github.com/vtlim/dihedral-scan
Compute dihedral scan in some molecule, such as to compare an MM force field to QM results.
Last synced: 25 Oct 2025
https://github.com/vtlim/glic
Scripts for fitting GLIC receptor to cryo-EM densities
Last synced: 24 Apr 2026
https://github.com/vtlim/advent2021
Advent of Code, https://adventofcode.com/
advent-of-code advent-of-code-2021 adventofcode
Last synced: 18 Jun 2025
https://github.com/vtlim/textsmoosh
Web app to process and combine multi-line text into a single line
css flask heroku html python text-editor
Last synced: 07 Feb 2026
https://github.com/vtlim/hv1
Free energy perturbation calculations for Hv1 protein
Last synced: 19 Mar 2026
https://github.com/vtlim/misc
Miscellaneous scripts for research and data analysis using Python, OpenEye Python Toolkit, VMD/Tcl, or Grace.
Last synced: 10 Oct 2025
https://github.com/vtlim/shapes
From Github workshop with Caitlin (2/15/18)
Last synced: 19 Apr 2026
https://github.com/vtlim/stock-market
Exploratory analysis of stock market data in R.
Last synced: 22 Apr 2026
https://github.com/vtlim/off_psi4
Quanformer is a Python-based pipeline for generating conformers, preparing quantum mechanical (QM) calculations, and processing QM results for a set of molecules and their conformers. *** This repo has a new location here:
Last synced: 06 Jan 2026
https://github.com/vtlim/letterlift
Bootstrap website for LetterLift, as a GitHub project page.
Last synced: 18 Feb 2026
https://github.com/vtlim/vtlim.github.io
Website of Victoria Lim
bootstrap css cv-website html javascript personal-website scss
Last synced: 23 Jan 2026
https://github.com/vtlim/mismatch
Web app to find mismatched base pairs between hybridized DNA sequences.
css dna dna-sequences flask heroku html javascript materializecss mismatch nucleobase python rna
Last synced: 15 Apr 2026