Projects in Awesome Lists tagged with rna-structure
A curated list of projects in awesome lists tagged with rna-structure .
https://github.com/baaihealth/OpenComplex
Trainable PyTorch framework for developing protein, RNA and complex models.
alphafold2 protein-structure pytorch rna-structure
Last synced: 01 Dec 2024
https://github.com/fjossinet/rnartist
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
bioinformatics java javafx-application kotlin rna rna-secondary-structure rna-structure
Last synced: 13 Apr 2025
https://github.com/mmagnus/rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
bioinformatics pdb python rna rna-pdb rna-puzzle rna-structure rna-tools rosetta simrna
Last synced: 21 Nov 2024
https://github.com/chaitjo/geometric-rna-design
gRNAde: Geometric Deep Learning for 3D RNA inverse design
biomolecule-design geometric-deep-learning graph-neural-networks inverse-design pytorch pytorch-geometric rna-structure
Last synced: 10 Apr 2025
https://github.com/fjossinet/rna-science-toolbox
A platform to do RNA science
bioinformatics python rna rna-structure
Last synced: 08 Apr 2025
https://github.com/fjossinet/rnartistcore
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
bioinformatics drawing-algorithm dsl java kotlin plot-rna rna rna-molecule rna-secondary-structure rna-structure visualization
Last synced: 08 Apr 2025
https://github.com/mooerslab/jupyterlabpymolpysnips
Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
biomolecular dna-structure grayscale jupyter jupyter-notebook jupyterlab ligand literate-programming mmcif moleclar-graphics molecular molecular-representation notebook pdb protein-structure python ribbon-diagram rna-structure snippets
Last synced: 08 May 2025
https://github.com/mooerslab/easypymol
Script to facilitate the making of horizontal scripts
ambient-occulsion biomolecular-structures black-and-white-cartoons coordinate-covalent-bonds horizontal-scripts metal-coordination molecular-artwork molecular-graphics molecular-structures molecular-visuallization pml protein-structure pymol pymol-macro-language rna-structure roundview scripting startup-aliases structural-bioinformatics tutorial-videos
Last synced: 08 May 2025
https://github.com/cgoliver/nussinov
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
backtracking dynamic-programming nussinov rna-folding rna-structure
Last synced: 21 Nov 2024
https://github.com/fjossinet/kaknas
A JavaFX app to visualize RNA alignments from Rfam database.
bioinformatics javafx kotlin rna-alignment rna-structure visualization
Last synced: 08 Apr 2025
https://github.com/fjossinet/assemble2
Assemble2 allows you to design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera
bioinformatics java pdb rna rna-structure visualization
Last synced: 08 Apr 2025
https://github.com/noncodo/bigredbutton
Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.
bioinformatics genome-annotation lncrna rna-structure transcriptomics
Last synced: 14 Apr 2025
https://github.com/seqan/lara
LaRA 2: Lagrangian Relaxed structural Alignment
alignment bioinformatics rna rna-structure
Last synced: 09 Apr 2025
https://github.com/s-will/bialign
Bialignment of RNAs and proteins
alignment bioinformatics protein-structure rna-structure
Last synced: 07 Apr 2025
https://github.com/fjossinet/rnartistfx
JavaFX widgets to visualize and manipulate RNA structures.
bioinformatics javafx kotlin rna-structure visualization
Last synced: 13 May 2025
https://github.com/kris96tian/dsa_cpp
Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]
aho-corasick-algorithm alignment blast-search burrows-wheeler-transform horspools-algorithm pushdown-automata q-grams rna-structure suffix-array
Last synced: 05 May 2025
https://github.com/mooerslab/rstudiopymolpysnips
PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.
dna-structure literate-programming molecular-artwork molecular-graphics molecular-structure molecular-visualization pdb protein-structure pymol pymolpysnips r-programming reticulate rmarkdown rna-structure rstudio
Last synced: 01 Apr 2025
https://github.com/seqan/mars
Motif-based aligned RNA searcher
descriptors motif rna-structure
Last synced: 03 Mar 2025