https://github.com/nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus

Last synced: 15 May 2025

https://github.com/ericmjl/flu-sequence-predictor

An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.

bokeh deep-learning flask flu flu-forecaster gaussian-processes influenza influenza-protein-sequences protein-sequences pymc vaccine variational-autoencoders

Last synced: 13 Apr 2025

https://github.com/cdcgov/mira

cdc-influenza-division genome-annotation genome-assembly influenza irma ncird-id quality-control rsv sars-cov-2

Last synced: 22 Apr 2025

https://github.com/hugetiny/endofworld

🌏Record the last days of this earth. Don't they know this's the end of the world. It ended when you say good-bye.

covid covid-19 covid-data doomsday earth echarts echarts-gl echarts4 flu global globe google-earth incident influenza war web-gl webgl wuhan

Last synced: 13 Mar 2025

https://github.com/hopkinsidd/flepimop

The Flexible Epidemic Modeling Pipeline

compartmental-models covid-19 dynamical-modeling infectious-disease-models influenza

Last synced: 20 Mar 2025

https://github.com/cdcgov/influenza-generation_time-us

Estimating the generation time for influenza transmission using household data in the United States

influenza united-states

Last synced: 01 Jan 2025

https://github.com/ecoronado92/model_influeza_seasonal_dynamics

stochastic modeling | HMM

baum-welch hmm influenza stochastic-processes viterb

Last synced: 17 Mar 2025

https://github.com/hrbrmstr/delphiepidata

Query the 'CMU' 'DELPHI' Epidemiological Data 'API' (package wrapper https://github.com/cmu-delphi/delphi-epidata/blob/master/src/client/delphi_epidata.R)

cdc delphi-epidata ilinet influenza r rstats

Last synced: 05 Mar 2025

https://github.com/nextstrain/flu_frequencies

Flu clade and mutation frequencies

clades flu influenza mutations

Last synced: 18 Dec 2024

https://github.com/cdcgov/mira-nf

cdc-influenza-division genome-annotation genome-assembly influenza irma ncird-id nextflow nextflow-pipeline nf-core quality-control rsv sars-cov-2

Last synced: 21 Feb 2025

https://github.com/4ment/aiv-migratory-flyways

data influenza

Last synced: 18 Feb 2025

https://github.com/iamjuniorb/covid-analysis

Heatmap showing the number of deaths month to month since the beginning of the pandemic.

covid covid-19 covid-data covid19 covid19-data influenza pandemic pandemic-analysis pneumonia python python-analysis python3 united-states

Last synced: 04 Mar 2025

https://github.com/4ment/aiv-rate-heterogeneity

Avian influenza virus data sets

data influenza

Last synced: 18 Feb 2025