Projects in Awesome Lists tagged with infectious-disease-models

https://github.com/rajeshrinet/pyross

PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross

compartment-models coronavirus covid-19 epidemic-simulations epidemiological-models epidemiological-predictions infectious-disease-models pyross sars-cov-2

Last synced: 05 Apr 2025

https://github.com/cdcgov/pyrenew

Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

epidemiology infectious-disease-models package renewal-process

Last synced: 22 Apr 2025

https://github.com/seabbs/idmodelr

Infectious disease model library and utilities

disease epidemiology infectious infectious-disease-models modelling open-science r-package rstats utliities

Last synced: 21 Feb 2025

https://github.com/speediedan/covid19

A set of "real-time" covid19 county-level dashboards w/ national and state choropleths for monitoring localized infection resurgences as distancing, testing and tracing measures evolve.

bayesian-methods bokeh choropleth coronavirus-real-time county-level covid-19 covid19 covid19-data dashboard differential-equations effective-reproductive-number health-policy infectious-disease-models jupyter jupyter-notebook r0 real-time rt sars-cov-2 seir

Last synced: 05 Apr 2025

https://github.com/hopkinsidd/flepimop

The Flexible Epidemic Modeling Pipeline

compartmental-models covid-19 dynamical-modeling infectious-disease-models influenza

Last synced: 20 Mar 2025

https://github.com/roche/covid-hcru-model

Supplemental appendix containing detailed mathematical description, methodology, and R code for modeling disease transmission, healthcare resource utilization, and mortality during the COVID-19 pandemic in the US using observed data from The COVID Tracking Project.

covid-19 covid-testing covid-treatment infectious-disease-models particle-filtering

Last synced: 01 Mar 2025

https://github.com/sepmein/cengceng

Infectious disease models implemented in python

compartmental-models infectious-disease-models mathmatical-framework python seir

Last synced: 16 Mar 2025

https://github.com/nassimayad87/episimr

EpiSimR is an R Shiny application designed for simulating the dynamics of epidemic and endemic disease spread. It utilizes deterministic compartmental mathematical models to provide interactive visualizations and insights into disease transmission and control strategies.

infectious-disease-models r seir-model shiny-apps simulation sir-model

Last synced: 02 Mar 2025

https://github.com/nistara/seednet

SEEDNet: Satellite Enhanced Epidemic Disease Network

epidemics epidemiology infectious-disease-models networks r stochastic

Last synced: 13 Apr 2025

https://github.com/jamesmbaazam/epiparameterdashboard

A dashboard for visualising the epidemiological parameters stored in the epiparameter package.

epidemiological-delay-distribution epidemiological-modelling epidemiology infectious-disease-models r-package rshinydashboard rstats-package

Last synced: 02 Apr 2025

https://github.com/gauravcodepro/odd-ratio-estimator

This function will take a data frame of the outbreak and will predict the odd ratios and the specific likelihood of occurrence of the disease in that specific geographical location

genomic-data-analysis genomics-data infectious-disease-models infectious-diseases odds-ratio python risk-analysis risk-assessment risk-management