Projects in Awesome Lists tagged with outbreak-analysis
A curated list of projects in awesome lists tagged with outbreak-analysis .
https://github.com/epinowcast/epinowcast
A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to reporting delays, right-truncation, missing data, and incomplete ascertainment
cmdstanr effective-reproduction-number-estimation epidemiology infectious-disease-surveillance nowcasting outbreak-analysis pandemic-preparedness real-time-infectious-disease-modelling stan
Last synced: 28 Jan 2026
https://github.com/epiverse-trace/cfr
R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
case-fatality-rate epidemic-modelling epidemiology epiverse health-outcomes outbreak-analysis r r-package sdg-3
Last synced: 26 Jul 2025
https://github.com/epiverse-trace/finalsize
R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
epidemic-modelling epidemiology epiverse outbreak-analysis r r-package rcpp sdg-3
Last synced: 03 Sep 2025
https://github.com/epiverse-trace/epico
R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia
colombia decision-support demographics epiverse outbreak-analysis r r-package spatio-temporal-analysis vector-borne-diseases
Last synced: 05 Jul 2025
https://github.com/epiverse-trace/episoap
[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates
automated-report decision-support epidemiology epiverse literate-programming outbreak-analysis pipelines r r-package rmarkdown-templates
Last synced: 26 Jul 2025