Projects in Awesome Lists tagged with cmdstanr

https://github.com/epinowcast/epinowcast

A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to reporting delays, right-truncation, missing data, and incomplete ascertainment

cmdstanr effective-reproduction-number-estimation epidemiology infectious-disease-surveillance nowcasting outbreak-analysis pandemic-preparedness real-time-infectious-disease-modelling stan

Last synced: 28 Jan 2026

https://github.com/cdcgov/ww-inference-model

An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

bayesian-inference cmdstanr forecasting hierarchical-models real-time-analytics stan wastewater-based-epidemiology

Last synced: 22 Apr 2025

https://github.com/wlandau/instantiate

Pre-compiled CmdStan models in R packages

bayesian-statistics cmdstan cmdstanr markov-chain-monte-carlo mc-stan stan

Last synced: 16 Mar 2025

https://github.com/wjakethompson/measr

R package for the Bayesian estimation of diagnostic classification models using Stan

bayesian cdm cmdstanr cognitive-diagnosis cognitive-diagnostic-models dcm diagnostic-classification-models psychometrics r r-package rstan rstats stan

Last synced: 03 Jul 2025

https://github.com/fweber144/shinybrms

An R package providing a GUI ('shiny' app) for the R package 'brms'.

bayes bayesian bayesian-data-analysis bayesian-inference bayesian-statistics brms cmdstanr gui mcmc r r-package rstan shiny shiny-app stan statistical-analysis statistical-inference statistical-models statistics

Last synced: 31 Aug 2025

https://github.com/wlandau/rmedicine2021-pipeline

Example code for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)

bayesian bayesian-statistics cmdstanr high-performance-computing markdown pipeline pipelines r r-markdown reproducibility stan statistics targets

Last synced: 04 Sep 2025

https://github.com/jbris/stan-cmdstanr-gpu-docker

A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling. GPU support using OpenCL is available.

bayes bayesian-inference brms cmdstan cmdstanr data-science docker posterior probabilistic-programming projpred rstan rstanarm shinystan stan stan-gpu stan-lang stan-math-library tidybayes tidyverse

Last synced: 04 May 2025

https://github.com/epiforecasts/eval-germany-sp-nowcasting

Evaluating Semi-Parametric Nowcasts of COVID-19 Hospital Admissions in Germany

cmdstanr covid-19 epinowcast germany hospitalisations nowcasting targets

Last synced: 14 Jun 2025

https://github.com/wlandau/rmedicine2021-slides

Slides for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)

bayesian bayesian-statistics cmdstanr high-performance-computing markdown pipeline r r-markdown reproducibility stan stantargets statistics targets

Last synced: 01 May 2026

https://github.com/wlandau/nyhackr2020

Presentation on targets at the New York Open Statistical Programming Meetup

cmdstan cmdstanr drake high-performance-computing pipelines r reproducibility rstats stan targets

Last synced: 08 Apr 2025

https://github.com/aliciagilmatute/analisis-multinivel-bayesiano

Este estudio explora el análisis multinivel desde un enfoque bayesiano para evaluar la variabilidad del rendimiento en matemáticas entre 10 centros educativos

bayesian-statistics cmdstanr data-analysis hierarchical-models multilevel-models rstats rstudio stan