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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by wlandau
A curated list of projects in awesome lists by wlandau .
https://github.com/wlandau/learndrake
An interactive free online short course on the drake R package
Last synced: 05 Nov 2024
https://github.com/wlandau/crew
A distributed worker launcher
high-performance-computing r r-package rstats
Last synced: 01 Nov 2024
https://github.com/wlandau/targets-tutorial
Short course on the targets R package
data-science make pipeline r r-package reproducibility reproducible-research rstats targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/targets-shiny
Example Shiny app containing a targets pipeline.
high-performance-computing make pipeline r reproducibility reproducible-research shiny targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/targets-minimal
A minimal example data analysis project with the targets R package
data-science high-performance-computing pipeline r reproducibility reproducible-research rstats statistics targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/drake-examples
Example workflows for the drake R package
data-science drake high-performance-computing makefile pipeline r reproducibility reproducible-research ropensci rstats workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/targets-four-minutes
Get started with the {targets} R package in four minutes
make pipeline reproducibility rstats targets
Last synced: 27 Oct 2024
https://github.com/wlandau/crew.cluster
crew launcher plugins for traditional high-performance computing clusters
crew high-performance-computing r r-package rstats
Last synced: 27 Oct 2024
https://github.com/wlandau/targets-stan
An example project to validate a Stan model in a targets pipeline
bayesian-statistics data-sceince high-performance-computing pipeline r reproducibility reproducible-research rstats stan-model statistics targets
Last synced: 27 Oct 2024
https://github.com/wlandau/txtq
A small message queue for interprocess communication
Last synced: 27 Oct 2024
https://github.com/wlandau/instantiate
Pre-compiled CmdStan models in R packages
bayesian-statistics cmdstan cmdstanr markov-chain-monte-carlo mc-stan stan
Last synced: 27 Oct 2024
https://github.com/wlandau/drakeplanner
A web app to create new drake projects
Last synced: 27 Oct 2024
https://github.com/wlandau/targetsketch
Sketch a pipeline of targets in an interactive web app
data-science high-performance-computing pipeline r reproducibility rstats shiny targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/crew.aws.batch
A {crew} launcher plugin for AWS Batch
aws-batch crew high-performance-computing r r-package rstats
Last synced: 27 Oct 2024
https://github.com/wlandau/gpu
Materials for the Iowa State University Statistics Department fall 2012 lecture series on general purpose GPU computing.
Last synced: 05 Nov 2024
https://github.com/wlandau/posit2024
posit::conf(2024) presentation about {mirai} and {crew}
Last synced: 27 Oct 2024
https://github.com/wlandau/targets-keras
An example Keras pipeline with the targets R package
data-science keras pipeline r reproducibility reproducible-research rstats statistics targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/apppackage
This Shiny app is a package! This package is a Shiny app!
Last synced: 27 Oct 2024
https://github.com/wlandau/parallelremake
Accelerate make/remake workflows in R.
Last synced: 05 Nov 2024
https://github.com/wlandau/rpharma2023-pipeline
R/Pharma 2023 workshop example code: leveraging {targets} and {crew} to simulate clinical trials
crew life-sciences rpharma simulation targets targets-pipeline
Last synced: 27 Oct 2024
https://github.com/wlandau/jeffleekmeme
True facts about Jeff Leek: https://yihui.name/en/2017/04/jeff-leek-facts/
Last synced: 27 Oct 2024
https://github.com/wlandau/rmedicine2021-pipeline
Example code for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)
bayesian bayesian-statistics cmdstanr high-performance-computing markdown pipeline pipelines r r-markdown reproducibility stan statistics targets
Last synced: 27 Oct 2024
https://github.com/wlandau/historicalborrowlong
Longitudinal Bayesian historical borrowing models
bayesian-statistics clinical-trials historical-data
Last synced: 27 Oct 2024
https://github.com/wlandau/targetopia
An R package ecosystem for democratized reproducible pipelines at scale
data-science high-performance-computing make pipeline r r-package r-targetopia reproducibility reproducible-research rstats targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/targets-debug
Slides and example code for debugging {targets} pipelines
data-science make pipeline r reproducibility rstats targets targets-pipeline
Last synced: 27 Oct 2024
https://github.com/wlandau/workers
Persistent and transient parallel workers for R
Last synced: 27 Oct 2024
https://github.com/wlandau/fbseq
A fully Bayesian, CUDA-accelerated method of analyzing RNA-seq data
Last synced: 27 Oct 2024
https://github.com/wlandau/rpharma2023
R/Pharma 2023 workshop: leveraging {targets} and {crew} to simulate clinical trials
crew life-sciences rpharma simulation targets targets-pipeline
Last synced: 05 Nov 2024
https://github.com/wlandau/remakegenerator
Generate large remake-style workflows with minimal code.
Last synced: 05 Nov 2024
https://github.com/wlandau/targets-intro
Introduction to the {targets} R package
data-science high-performance-computing make pipeline r r-package r-targetopia reproducibility reproducible-research rstats targets workflow
Last synced: 27 Oct 2024
https://github.com/wlandau/larug2020
Presentation about the targets R package at the Los Angeles R Users Group Meetup
high-performance-computing make pipeline r reproducibility reproducible-computation rstats targets workflow
Last synced: 05 Nov 2024
https://github.com/wlandau/rna-seq-stan
A comparison of Eric's method to other methods
Last synced: 05 Nov 2024
https://github.com/wlandau/fbseqcuda
CUDA-accelerated backend of fbseq for the MCMC.
Last synced: 05 Nov 2024
https://github.com/wlandau/stantargets-talk
Presentation about the {stantargets} R package
bayes bayesian bayesian-statistics pipeline reproducibility reproducible-research targets targets-pipeline
Last synced: 05 Nov 2024
https://github.com/wlandau/historicalborrow
Non-longitudinal Bayesian historical borrowing models
bayesian-statistics clinical-trials historical-data
Last synced: 27 Oct 2024
https://github.com/wlandau/downsize
Toggle the test and production versions of your workflow with the flip of a global option.
Last synced: 27 Oct 2024
https://github.com/wlandau/rmedicine2021-slides
Slides for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)
bayesian bayesian-statistics cmdstanr high-performance-computing markdown pipeline r r-markdown reproducibility stan stantargets statistics targets
Last synced: 05 Nov 2024
https://github.com/wlandau/rcppcuda
A skeleton R package that uses Rcpp, CUDA, and s4 classes. This is a learning exercise.
Last synced: 05 Nov 2024
https://github.com/wlandau/condo
This is a tutorial on how to log in and run R jobs on the Iowa State condo cluster.
Last synced: 05 Nov 2024
https://github.com/wlandau/r-lille-2021
Presentation about {targets} to the Lille R User Meetup Group
Last synced: 05 Nov 2024
https://github.com/wlandau/stantargets-example-validation
A minimal example of the stantargets package
Last synced: 05 Nov 2024
https://github.com/wlandau/rmedicine2020
Slides and source code for a talk about drake at R/Medicine 2020.
life-sciences pipeline r-language reproducibility simulation workflow
Last synced: 05 Nov 2024
https://github.com/wlandau/sdss2019
Venue: 2019 ASA Symposium on Data Science and Statistics
Last synced: 05 Nov 2024
https://github.com/wlandau/ncb2023
Short course on Bayesian methods for nonclinical statisticians: https://github.com/wlandau/ncb2023
bayesian-statistics life-sciences
Last synced: 05 Nov 2024
https://github.com/wlandau/targets-ohdsi
Presentation on {targets} to OHDSI
bayesian-statistics pipeline reproducibility rstats
Last synced: 05 Nov 2024
https://github.com/wlandau/rpharma2020
Slides and source code for a talk about targets at R/Pharma 2020.
data-science high-performance-computing make pipeline r reproducibility reproducible-research rstats statistics targets workflow
Last synced: 05 Nov 2024
https://github.com/wlandau/bayes-lund-2021
A talk on Target Markdown and {stantargets} at Bayes@Lund
Last synced: 05 Nov 2024
https://github.com/wlandau/nyhackr2020
Presentation on targets at the New York Open Statistical Programming Meetup
cmdstan cmdstanr drake high-performance-computing pipelines r reproducibility rstats stan targets
Last synced: 05 Nov 2024
https://github.com/wlandau/workflowhelper
Analyze multiple datasets in multiple ways with a smooth, efficient, parallelized, reproducible R workflow.
Last synced: 05 Nov 2024
https://github.com/wlandau/horseshoe
Debug fbseq under the horseshoe distribution.
Last synced: 05 Nov 2024
https://github.com/wlandau/cloud
Materials for the cloud computing group in the Iowa State University Department of Statistics
Last synced: 05 Nov 2024
https://github.com/wlandau/normalization
Compare normalization methods for fbseq
Last synced: 05 Nov 2024
https://github.com/wlandau/cmq-docker
Experimentation with clustermq workers inside Docker containers
Last synced: 05 Nov 2024
https://github.com/wlandau/interfacerc
This repo has examples demonstrating the interface between R and C and the Rcpp package.
Last synced: 05 Nov 2024
https://github.com/wlandau/cmq-ssh
Casual experimentation with a clustermq worker inside a Docker container
Last synced: 05 Nov 2024
https://github.com/wlandau/remakeinpackage
Tests if github.com/richfitz/remake plays nicely with reproducible workflows implemented as R packages.
Last synced: 05 Nov 2024
https://github.com/wlandau/portfolio2020
personal website and portfolio through late 2020
Last synced: 05 Nov 2024
https://github.com/wlandau/dllreprex
reprex of a compilation issue. not a serious software project
Last synced: 05 Nov 2024
https://github.com/wlandau/zmq_hello_world
Just getting started with ZeroMQ
Last synced: 05 Nov 2024
https://github.com/wlandau/rstudiotest1
teaching myself to use github via rstudio (long overdue)
Last synced: 05 Nov 2024
https://github.com/wlandau/dynamic-ledger
A little personal accounting package written in C. More to come later.
Last synced: 05 Nov 2024
https://github.com/wlandau/beta4horseshoe
Tangential analysis of credible intervals under the horseshoe model.
Last synced: 05 Nov 2024
https://github.com/wlandau/grad_school_portfolio
My old website/portfolio from grad school (2011-2016).
Last synced: 05 Nov 2024
https://github.com/wlandau/cmq-targets
Experimentation with clustermq workers in Docker containers for targets pipelines
Last synced: 05 Nov 2024
https://github.com/wlandau/drake-datafest-2019
https://datafest2019.sched.com/event/JOG5/reproducible-computation-at-scale-in-r
Last synced: 05 Nov 2024
https://github.com/wlandau/user-conf-2022
useR! 2022 talk
data-version-control reproducibility targets targets-pipeline
Last synced: 05 Nov 2024
https://github.com/wlandau/eply
purrr is better than eply! Please use purrr.
Last synced: 05 Nov 2024
https://github.com/wlandau/rpharma2019
Repo for the Workshop: "Artificial neural networks in R with Keras and TensorFlow" at the 2nd annual R in Pharma Conference Aug. 21st-23rd 2019 at Harvard University, Cambridge, US
Last synced: 05 Nov 2024
https://github.com/wlandau/actionsreprex
Code to reproduce GitHub Actions issues in an R package
Last synced: 05 Nov 2024
https://github.com/wlandau/fbseqopenmp
Light backend of the fbseq package. Makes use of parallelism through OpenMP if R is compiled with OpenMP support.
Last synced: 05 Nov 2024