Projects in Awesome Lists tagged with stan
A curated list of projects in awesome lists tagged with stan .
https://github.com/stan-dev/stan
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics stan
Last synced: 06 Jan 2026
https://github.com/uber/orbit
A Python package for Bayesian forecasting with object-oriented design and probabilistic models under the hood.
arima bayesian bayesian-methods bayesian-statistics changepoint exponential-smoothing forecast forecasting machine-learning orbit probabilistic probabilistic-programming pyro pystan python pytorch regression regression-models stan time-series
Last synced: 09 Apr 2025
https://github.com/paul-buerkner/brms
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
bayesian-inference brms multilevel-models r-package stan statistical-models
Last synced: 14 May 2025
https://paulbuerkner.com/brms/
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
bayesian-inference brms multilevel-models r-package stan statistical-models
Last synced: 10 Jul 2025
https://github.com/stan-dev/rstan
RStan, the R interface to Stan
bayesian-data-analysis bayesian-inference bayesian-statistics mcmc r r-package stan
Last synced: 11 Apr 2025
https://github.com/avehtari/bda_py_demos
Bayesian Data Analysis demos for Python
bayesian bayesian-data-analysis bayesian-inference mcmc python stan
Last synced: 16 May 2025
https://github.com/avehtari/BDA_py_demos
Bayesian Data Analysis demos for Python
bayesian bayesian-data-analysis bayesian-inference mcmc python stan
Last synced: 19 Jul 2025
https://github.com/stan-dev/pystan2
PyStan, the Python interface to Stan
machine-learning probabilistic-programming python stan statistics
Last synced: 01 May 2025
https://github.com/stan-dev/math
The Stan Math Library is a C++ template library for automatic differentiation of any order using forward, reverse, and mixed modes. It includes a range of built-in functions for probabilistic modeling, linear algebra, and equation solving.
automatic-differentiation boost cpp eigen math stan stan-math-library sundials
Last synced: 06 Jan 2026
https://mjskay.github.io/tidybayes/
Bayesian analysis + tidy data + geoms (R package)
bayesian-data-analysis brms ggplot2 jags r r-package stan tidy-data visualization
Last synced: 10 Jul 2025
https://github.com/mjskay/tidybayes
Bayesian analysis + tidy data + geoms (R package)
bayesian-data-analysis brms ggplot2 jags r r-package stan tidy-data visualization
Last synced: 15 May 2025
https://github.com/avehtari/bda_r_demos
Bayesian Data Analysis demos for R
bayesian bayesian-data-analysis bayesian-inference mcmc monte-carlo r stan
Last synced: 14 Apr 2025
https://github.com/avehtari/BDA_R_demos
Bayesian Data Analysis demos for R
bayesian bayesian-data-analysis bayesian-inference mcmc monte-carlo r stan
Last synced: 14 Mar 2025
https://github.com/stan-dev/bayesplot
bayesplot R package for plotting Bayesian models
bayesian ggplot2 mcmc pandoc r-package stan statistical-graphics visualization
Last synced: 15 May 2025
https://github.com/stan-dev/rstanarm
rstanarm R package for Bayesian applied regression modeling
bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics multilevel-models r r-package rstan rstanarm stan statistical-modeling
Last synced: 04 Apr 2025
https://github.com/storopoli/Bayesian-Statistics
Bayesian statistics graduate course
bayesian bayesian-statistics course julia probabilistic-programming probability stan turing
Last synced: 09 Oct 2025
https://github.com/perlatex/R_for_Data_Science
Materials for teaching R and tidyverse
Last synced: 30 Jul 2025
https://github.com/sibylhe/mmm_stan
Python/STAN Implementation of Multiplicative Marketing Mix Model, with deep dive into Adstock (carry-over effect), ROAS, and mROAS
bayesian-regression constrained-regression marketing-mix-modeling media-mix-modeling pystan roas stan
Last synced: 06 May 2025
https://github.com/storopoli/bayesian-statistics
Bayesian statistics graduate course
bayesian bayesian-statistics course julia probabilistic-programming probability stan turing
Last synced: 26 Jan 2026
https://github.com/stanjulia/stan.jl
Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.
Last synced: 17 Dec 2025
https://github.com/StanJulia/Stan.jl
Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.
Last synced: 10 Jul 2025
https://github.com/stan-dev/shinystan
shinystan R package and ShinyStan GUI
bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics mcmc r r-package shiny-apps stan statistical-graphics
Last synced: 10 Apr 2025
https://github.com/m-clark/miscellaneous-r-code
Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. **Superseded by the models-by-example repo**.
additive-models bayesian em factor-analysis gaussian-processes irt jags julia machine-learning matlab mixed-models mixture-model ordinal-regression pca probit python r stan survival-analysis zip
Last synced: 13 Apr 2025
https://github.com/m-clark/Miscellaneous-R-Code
Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. **Superseded by the models-by-example repo**.
additive-models bayesian em factor-analysis gaussian-processes irt jags julia machine-learning matlab mixed-models mixture-model ordinal-regression pca probit python r stan survival-analysis zip
Last synced: 14 Mar 2025
https://github.com/avehtari/modelselection
Case studies on model assessment, model selection and inference after model selection
bayesian rstanarm stan variable-selection
Last synced: 05 Jan 2026
https://github.com/stan-dev/loo
loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
bayes bayesian bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics cross-validation information-criterion model-comparison r-package stan
Last synced: 04 Apr 2025
https://github.com/stan-dev/cmdstanr
CmdStanR: the R interface to CmdStan
bayes bayesian markov-chain-monte-carlo maximum-likelihood mcmc r-package stan variational-inference
Last synced: 07 Apr 2025
https://github.com/epiforecasts/EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
backcalculation covid-19 gaussian-processes open-source reproduction-number rstats stan
Last synced: 18 Mar 2026
https://github.com/epiforecasts/epinow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
backcalculation covid-19 gaussian-processes open-source reproduction-number rstats stan
Last synced: 14 Jun 2025
https://github.com/xfim/ggmcmc
Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
bayesian-data-analysis ggplot2 graphical jags mcmc r stan
Last synced: 08 Oct 2025
https://github.com/stan-dev/projpred
Projection predictive variable selection
bayes bayesian bayesian-inference r-package rstanarm stan statistics variable-selection
Last synced: 05 Apr 2025
https://github.com/vasishth/bayescogsci
Introduction to Bayesian Data Analysis for Cognitive Science by Nicenboim, Schad, Vasishth
bayesian-data-analysis brms linguistics psychology stan
Last synced: 28 Feb 2026
https://github.com/m-clark/bayesian-basics
:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.
bayesian bayesian-analysis bayesian-data-analysis bayesian-inference bayesian-methods bayesian-statistics brms gibbs hamiltonian-monte-carlo likelihood mcmc metropolis-hastings posterior-predictive posterior-probability prior r regression-models rstan rstanarm stan
Last synced: 17 Jun 2025
https://github.com/brian-lau/matlabstan
Matlab interface to Stan, a package for Bayesian inference
bayesian matlab matlab-interface stan statistics
Last synced: 12 May 2025
https://github.com/stan-dev/stan-mode
Emacs mode for Stan.
bayesian emacs stan stan-language statistics
Last synced: 24 Jul 2025
https://github.com/jgabry/bayes-vis-paper
'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
bayesian-data-analysis journal-article r stan statistical-graphics statistical-workflow
Last synced: 14 Sep 2025
https://github.com/avehtari/bda_m_demos
Bayesian Data Analysis demos for Matlab/Octave
bayesian bayesian-data-analysis bayesian-inference mcmc octave stan
Last synced: 09 Oct 2025
https://github.com/m-clark/visibly
👓 Functions related to R visualizations
adjacent brms coefficients colorgorical complementary gam ggplot2-themes heatmap mermod mgcv mixed-models palettes plotly-theme r r-package random-effects stan tetradic triadic visualization
Last synced: 30 Apr 2025
https://github.com/epinowcast/epinowcast
A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to reporting delays, right-truncation, missing data, and incomplete ascertainment
cmdstanr effective-reproduction-number-estimation epidemiology infectious-disease-surveillance nowcasting outbreak-analysis pandemic-preparedness real-time-infectious-disease-modelling stan
Last synced: 28 Jan 2026
https://github.com/n-kall/priorsense
priorsense: an R package for prior diagnostics and sensitivity
bayes bayesian bayesian-data-analysis bayesian-methods prior-distribution r r-package sensitivity-analysis stan
Last synced: 05 Apr 2025
https://github.com/eigenfoo/stan-vim
A Vim plugin for the Stan probabilistic programming language.
mc-stan stan syntax-highlighting vim vim-plugin
Last synced: 22 Mar 2025
https://github.com/stan-dev/rstantools
Tools for Developing R Packages Interfacing with Stan
bayesian-data-analysis bayesian-statistics developer-tools r-package stan
Last synced: 31 Aug 2025
https://github.com/ropensci/stantargets
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
bayesian high-performance-computing make r r-targetopia reproducibility rstats rstats-package stan statistics targets
Last synced: 27 Dec 2025
https://github.com/wwiecek/baggr
R package for Bayesian meta-analysis models, using Stan
bayesian-statistics meta-analysis quantile-regression stan treatment-effects
Last synced: 26 Feb 2026
https://github.com/flatironinstitute/walnuts
Within-orbit Adaptive Leapfrog No-U-Turn Sampler
Last synced: 27 Jun 2026
https://github.com/helske/walker
Bayesian Generalized Linear Models with Time-Varying Coefficients
bayesian generalized-linear-models mcmc r stan time-series
Last synced: 28 Feb 2026
https://github.com/rok-cesnovar/stan-distributions
A web app to visualize distributions in Stan. Uses Stan Math C++ compiled to Webassembly to evaluate the functions using actual Stan implementations. Uses d3.js for visualizations.
Last synced: 04 Mar 2026
https://github.com/mrtkp9993/statistical-modeling-examples
Basic statistical modelling examples.
analysis-of-variance anova matplotlib pandas pystan python python3 r-language r-markdown r-programming regression-analysis regression-models seaborn stan statistical-analysis statistical-inference statistical-modeling
Last synced: 07 May 2025
https://github.com/mrtkp9993/Statistical-Modeling-Examples
Basic statistical modelling examples.
analysis-of-variance anova matplotlib pandas pystan python python3 r-language r-markdown r-programming regression-analysis regression-models seaborn stan statistical-analysis statistical-inference statistical-modeling
Last synced: 13 Jul 2025
https://github.com/nicholasjclark/physalia-forecasting-course
Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}
brms ecological-modelling forecasting generalised-additive-models generalised-linear-models generalized-additive-models mgcv multilevel-models mvgam stan time-series-analysis vector-autoregression
Last synced: 19 Jan 2026
https://github.com/asael697/bayesforecast
Automatic forecasting and Bayesian modeling for time series with Stan
bayesian-inference forecasting-models mcmc stan time-series-analysis
Last synced: 22 Jun 2025
https://github.com/m-clark/m-clark.github.io
Personal website
bayesian-statistics cscar data-science machine-learning michael-clark r stan statistics
Last synced: 07 Mar 2026
https://github.com/ropensci/dynamite
Bayesian Inference of Complex Panel Data
bayesian-inference panel-data r r-package rstats stan statistical-models
Last synced: 23 Feb 2026
https://github.com/abhiagwl/vistan
A simple library to run variational inference on Stan models.
autograd automatic-differentiation inference inference-algorithms iw-sampling normalizing-flows posterior pystan rank-gaussian realnvp stan stan-models variational-bayes variational-inference
Last synced: 16 Jan 2026
https://github.com/andrewheiss/diff-means-half-dozen-ways
Run standard t-tests, simulations, and Bayesian difference in means tests with R and Stan
Last synced: 16 Mar 2026
https://github.com/integrated-inferences/causalqueries
Bayesian inference from binary causal models
bayes causal dags mixedmethods stan
Last synced: 13 Feb 2026
https://github.com/integrated-inferences/CausalQueries
Bayesian inference from binary causal models
bayes causal dags mixedmethods stan
Last synced: 26 Apr 2025
https://github.com/jhelvy/stantuner
This code uses the algebra solver in Stan (https://mc-stan.org/) to find the parameters of a distribution that produce a desired tail behavior.
distributions parameters priors r rstan rstats stan
Last synced: 05 Mar 2025
https://github.com/seananderson/covidseir
Bayesian SEIR model to estimate the effects of social-distancing on COVID-19
Last synced: 07 May 2025
https://github.com/elizavetasemenova/embracinguncertainty
Material for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"
amld2020 bayesian-inference julia-language pymc3 stan turinglang
Last synced: 08 Mar 2026
https://github.com/danheck/metabma
Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis
bayes bayes-factor bayesian-inference evidence-synthesis meta-analysis model-averaging r stan
Last synced: 16 Mar 2025
https://github.com/stan-dev/mathematicastan
A Mathematica package to interact with CmdStan
Last synced: 05 Feb 2026
https://github.com/jtimonen/lgpr
R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for inferring covariate effects and assessing covariate relevances. Various models can be specified using a convenient formula syntax.
bayesian-inference gaussian-processes longitudinal-data r-packages stan
Last synced: 21 Feb 2026
https://github.com/wardbrian/scikit-stan
A sklearn style interface to Stan regression models
python scikit-learn sklearn-compatible stan
Last synced: 14 Mar 2026
https://github.com/novartis/bamdd
Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms
Last synced: 07 Feb 2026
https://github.com/wlandau/instantiate
Pre-compiled CmdStan models in R packages
bayesian-statistics cmdstan cmdstanr markov-chain-monte-carlo mc-stan stan
Last synced: 16 Mar 2025
https://github.com/cdcgov/ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
bayesian-inference cmdstanr forecasting hierarchical-models real-time-analytics stan wastewater-based-epidemiology
Last synced: 22 Apr 2025
https://github.com/4ment/phylostan
Phylogenetic inference using Stan
bayes hmc phylogenetics pystan stan variational-inference
Last synced: 26 Jul 2025
https://github.com/mbjoseph/scr-stan
Spatial capture-recapture models in Stan
bayesian-statistics capture-recapture data-augmentation density-estimation ecology r spatial stan
Last synced: 26 Apr 2025
https://github.com/biocore/birdman
Bayesian Inferential Regression for Differential Microbiome Analysis
bayesian-inference bioinformatics microbiome python regression stan
Last synced: 13 May 2025
https://github.com/teddygroves/bibat
A batteries-included template for Bayesian data analysis projects
arviz bayesian-statistics cmdstanpy cookiecutter mcmc python stan template-project
Last synced: 28 Jul 2025
https://github.com/pakillo/bayes-r-jags-intro
An introduction to hierarchical Bayesian modelling with R, JAGS and STAN
bayesian-statistics jags r slide stan
Last synced: 16 Oct 2025
https://github.com/openpharma/brms.mmrm
R package to run Bayesian MMRMs using {brms}
brms life-sciences mc-stan mmrm r stan statistics
Last synced: 08 Oct 2025
https://github.com/jandraor/readsdr
Translate System Dynamics models (Stella, Vensim) into R
Last synced: 22 Oct 2025
https://github.com/onnela-lab/gptools
Gaussian processes on graphs and lattices in Stan.
fft gaussian-processes graph stan
Last synced: 14 Jan 2026
https://github.com/epiforecasts/inc2prev
Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
covid-19 open-science rstats stan
Last synced: 01 Feb 2026
https://github.com/thomasathorne/clj-stan
A library to interface with STAN.
bayesian-inference machine-learning stan
Last synced: 21 Feb 2026
https://github.com/jeffreypullin/rater
R package to fit statistical models to repeated categorical rating data using Stan
annotations bayesian bayesian-statistics r r-package stan
Last synced: 27 Feb 2026
https://github.com/jrnold/bugs-examples-in-stan
Simon Jackman's "BUGS Examples" translated into Stan
bayesian bayesian-statistics stan
Last synced: 06 Jan 2026
https://github.com/kaz-yos/bayes2018
My notes on Bayesian statistics in Stan, etc (2018-)
Last synced: 14 Oct 2025
https://github.com/jhrcook/bayesian-data-analysis-course
My notes and work for the Bayesian Data Analysis course taught by Aki Vehtari.
bayes bayesian-data-analysis bayesian-statistics course distill-website rmarkdown stan
Last synced: 18 Oct 2025
https://github.com/sudohainguyen/stan-small-tumor-aware-network
Unofficial implementation of STAN paper published at ISBI 2020 by researchers from University of Idaho using Tensorflow Keras 2.0.
implementation-of-research-paper semantic-segmentation stan stan-paper tensorflow2
Last synced: 11 Jun 2025
https://github.com/m-clark/docs
Documents that go into methodological detail regarding various statistical procedures.
additive-models bayesian-methods mixed-models r stan statistical-procedures structural-equation-modeling
Last synced: 30 Apr 2025
https://github.com/wjakethompson/measr
R package for the Bayesian estimation of diagnostic classification models using Stan
bayesian cdm cmdstanr cognitive-diagnosis cognitive-diagnostic-models dcm diagnostic-classification-models psychometrics r r-package rstan rstats stan
Last synced: 03 Jul 2025
https://github.com/fweber144/shinybrms
An R package providing a GUI ('shiny' app) for the R package 'brms'.
bayes bayesian bayesian-data-analysis bayesian-inference bayesian-statistics brms cmdstanr gui mcmc r r-package rstan shiny shiny-app stan statistical-analysis statistical-inference statistical-models statistics
Last synced: 31 Aug 2025
https://github.com/noaa-nwfsc/zoid
Trinomial mixture models in Stan, for fitting to compositional data with 0s
cran mixture-models nwfsc-cb r-package stan
Last synced: 19 Feb 2026
https://github.com/ivan-bocharov/stan-vscode
Stan language support for Visual Studio Code
stan syntax-highlighting vscode
Last synced: 25 Jan 2026
https://github.com/kyleclo/structural
Structural time series modeling and forecasting in Python
changepoint forecast forecasting prophet python stan structural time-series timeseries
Last synced: 10 Jun 2025
https://github.com/mbjoseph/wildfire-extremes
Spatiotemporal modeling of wildfire extremes
bayesian ecology fire research-compendium stan
Last synced: 26 Feb 2025
https://github.com/wlandau/rmedicine2021-pipeline
Example code for a possible talk at R/Medicine 2021 (submitted and under review, accepted talks not yet determined)
bayesian bayesian-statistics cmdstanr high-performance-computing markdown pipeline pipelines r r-markdown reproducibility stan statistics targets
Last synced: 04 Sep 2025
https://github.com/wardbrian/stan-web-demo
Stan, compiled to Webassembly, running in your browser!
Last synced: 12 Apr 2025
https://github.com/kaitumisuuringute-keskus/brmspy
Python-first access to R’s brms with proper parameter names, ArviZ support, and cmdstanr performance. The easiest way to run brms models from Python.
bayesian bayesian-inference brms multilevel-models stan statistical-models
Last synced: 13 Jan 2026
https://github.com/m-clark/stanr_workshop
A workshop on using Stan with R.
bobross kittens lamborghini r stan workshop
Last synced: 30 Apr 2025
https://nivlab.github.io/nivstan/
Recipes for cognitive modeling using Stan [work in progress]
Last synced: 18 Nov 2025
